Scheffersomyces stipitis: PICST_67185
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Entry
PICST_67185 CDS
T01023
Name
(RefSeq) Ku80 protein
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
pic
Scheffersomyces stipitis
Pathway
pic03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PICST_67185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pic03400
]
PICST_67185
DNA repair and recombination proteins [BR:
pic03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
PICST_67185
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Motif
Other DBs
NCBI-GeneID:
4838200
NCBI-ProteinID:
XP_001383282
JGI:
67185
UniProt:
A3LQS3
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Position
3:40238..42326
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AA seq
685 aa
AA seq
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MTFFVIDTTSEMVNRSNPVSKRSSLERGLGYFHDHTATLLLKNRKIDRVGIICASDAGNH
VYSADEAFTYTDLRHFSTIIEESCKVTSGPPGKPSLVEAVTLGLNQFKPKIHLKYLRNLV
IISNAAGSQDLDEVDLSEYTSLIKAYNINVIFVGIDFSANFEKTPEKEKNEQFWRKIVEK
EWGGVVLDADEANESLVYSSTLKKVAPRVSYSGSITFGLSSDSLTNVSILQDDPLSLKLD
VQTFPATKIEKIVGHTYTISENHAANTVKRTANYYYKKYDNNEGRDEMAGEQDDDDNNGN
YVKVDVHPGEFVPGFKYSNRDIIAVNSDLAEIAQLRSNPGLSIIGFIQKTNLPYAYFTDE
SSYVIPTKGGKVSNPILFNSFAKALLELKAVALARFVLADGKEINLCVLIPQLVSVNGRL
SYSFISVRLALKEDQKIGRFPYLTKKAESQIDKDEIEAEDEDDDDEDEDDKKREEQGDIR
QRKFPSDETNSLMDSFILSRDLDGGSNKPTINVLHNQKLDLVDSQCVYMGDRLDDMSVDE
KLIPRSTALAKYNRNLKKIIITSLEHDSLSLFLSEEKFVEKYLVEKNPNAEKISNLYHYD
NILRGNTVGTKGWLKGFNVHSSDISKTLIDALDVKYLEKDEKKHKRRKYEGTAFERFFRN
EGDSANSDMKADFDEFFDVKDLLGG
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgacgttcttcgtcattgataccacactggagatggtcaataggtcaaatcccgtttca
aaaagatcaagccttgagagaggattaggctactttcatgatcatactgcgactctattg
cttaagaacaggaagattgaccgcgtaggcataatttgtgcctcagatgctggtaaccat
gtctacagtgctgatgaggctttcacatatacggatcttcgtcacttttccaccattata
gaagagtcgtgtaaagtcacatcagggccaccaggcaagccaagtcttgtagaagccgtg
acgttgggactcaaccaattcaaacccaagattcatttaaagtacttgcgtaacttggtg
atcatttcaaatgccgcaggatcacaagatctagatgaagtggacttgagcgagtatacg
agtttgattaaggcttacaacatcaacgtaatatttgtaggcatagacttcctggccaac
tttgagaagactccagaaaaagaaaaaaacgaacaattctggagaaagattgtagagaag
gaatggggtggcgtagttttggatgcggacgaagcaaatgagtctttggtgtactcgctg
acgctcaagaaagttgctcccagagtaagctattcaggctcaataacatttggactaagt
agcgattccttaaccaatgtaagcatattgcaagatgatcctttatcgcttaaattagac
gttcagacattcccagctaccaagattgagaaaatagtcggtcacacatatacgatatcc
gagaaccatgccgccaataccgttaagagaacagcaaattactattacaagaagtatgat
aacaatgaaggaagagatgaaatggctggagaacaggacgatgatgacaacaatggcaac
tatgtcaaagtggatgttcatccaggcgaatttgtaccaggcttcaaatattcgaatcgg
gatatcattgctgtaaattccgaccttgctgaaatagcacagcttcgctcgaatcctgga
ctctccattatcggcttcattcagaaaaccaacctaccttatgcatatttcacggatgaa
tcaagttatgtaataccaacaaagggaggcaaagtgtcaaatccaattttgttcaactct
tttgccaaagctttgcttgaattgaaagctgttgcattagctcgtttcgtgttggctgat
ggtaaggaaataaatctttgtgtcttgattcctcaacttgtctcggtaaatggcaggtta
tcgtactcgtttatactggttagactagcattgaaagaagaccagaagatcggtagattt
ccctacttgaccaagaaggctgaatctcaaattgataaagatgaaattgaagcagaagac
gaagacgatgatgatgaagatgaagatgacaagaaacgagaagagcaaggcgatatacgt
caacgtaaatttccatccgatgaaactaattccttgatggattcttttattttatcgcga
gatttggatggtggttccaacaagcctactattaatgtcctacataatcagaaattagac
ttagtcgatagtcaatgtgtttacatgggcgacaggctagatgatatgagcgtagacgaa
aagcttattccacgctccactgctttggcgaagtataacagaaacttgaagaagatcatc
atcacatcgctcgagcatgatagtctttccttattcctcagtgaagagaagtttgtggaa
aagtacttggttgagaagaatcccaatgctgagaagatatcgaatctataccactacgac
aatattcttcgaggcaacactgtaggcaccaagggctggctcaaaggcttcaatgtacat
tcgagcgatatttccaagacattgatcgatgcccttgatgtgaaatatcttgagaaggac
gagaagaaacacaagcgtcgtaagtacgaaggaactgcattcgaacgattcttccgtaat
gaaggcgactctgcgaactccgatatgaaggctgactttgatgaatttttcgacgttaaa
gacttattgggtgggtag
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