Scheffersomyces stipitis: PICST_68190
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Entry
PICST_68190 CDS
T01023
Name
(RefSeq) predicted protein
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
pic
Scheffersomyces stipitis
Pathway
pic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PICST_68190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_68190
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PICST_68190
mRNA degradation factors
5'-3' decay
Lsm complex
PICST_68190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
4840147
NCBI-ProteinID:
XP_001385976
JGI:
68190
UniProt:
A3LYA5
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Position
6:complement(1450472..1451183)
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AA seq
166 aa
AA seq
DB search
MEKDALAPNVEDLYLESYAFTTAAAIVGSVDRKIFVLLRDGRNLFGILRTFDQFANLVLQ
DTVERIYLDNDKKQPEPQEDGSIEQKRFGQAYRGIFMVRGENVVMMGELDIDREDDHLAE
LQQIPFEEAEKELEKSHAETIRNEKTRSKQFLAKGLINDFVKSDLY
NT seq
501 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagacgctttggctcccaacgtcgaagacttgtatttggagtcgtatgccttc
accaccgccgccgccattgtaggctcggtagaccgaaagatatttgtgttgttgagagat
ggcagaaacctcttcggcattttgcggacttttgaccaatttgccaacttggtcttgcaa
gacactgtagagagaatatacttggataacgacaaaaaacagcccgagccacaagaagac
ggctccatagagcagaagcgctttggtcaagcctacagaggcattttcatggtcagaggc
gaaaacgtagtcatgatgggagaacttgatatcgatagagaagatgaccatttggcagaa
ttgcagcagattccatttgaagaagccgaaaaggagttggaaaagtcccacgctgaaaca
atccgtaacgagaaaaccagatctaagcagtttttggctaaggggctcatcaacgacttt
gtcaagtcggacttgtactga
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