KEGG   Scheffersomyces stipitis: PICST_68190
Entry
PICST_68190       CDS       T01023                                 
Name
(RefSeq) predicted protein
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
pic  Scheffersomyces stipitis
Pathway
pic03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PICST_68190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pic03019]
    PICST_68190
Messenger RNA biogenesis [BR:pic03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PICST_68190
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     PICST_68190
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 4840147
NCBI-ProteinID: XP_001385976
JGI: 68190
UniProt: A3LYA5
LinkDB
Position
6:complement(1450472..1451183)
AA seq 166 aa
MEKDALAPNVEDLYLESYAFTTAAAIVGSVDRKIFVLLRDGRNLFGILRTFDQFANLVLQ
DTVERIYLDNDKKQPEPQEDGSIEQKRFGQAYRGIFMVRGENVVMMGELDIDREDDHLAE
LQQIPFEEAEKELEKSHAETIRNEKTRSKQFLAKGLINDFVKSDLY
NT seq 501 nt   +upstreamnt  +downstreamnt
atggagaaagacgctttggctcccaacgtcgaagacttgtatttggagtcgtatgccttc
accaccgccgccgccattgtaggctcggtagaccgaaagatatttgtgttgttgagagat
ggcagaaacctcttcggcattttgcggacttttgaccaatttgccaacttggtcttgcaa
gacactgtagagagaatatacttggataacgacaaaaaacagcccgagccacaagaagac
ggctccatagagcagaagcgctttggtcaagcctacagaggcattttcatggtcagaggc
gaaaacgtagtcatgatgggagaacttgatatcgatagagaagatgaccatttggcagaa
ttgcagcagattccatttgaagaagccgaaaaggagttggaaaagtcccacgctgaaaca
atccgtaacgagaaaaccagatctaagcagtttttggctaaggggctcatcaacgacttt
gtcaagtcggacttgtactga

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