Scheffersomyces stipitis: PICST_68661
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Entry
PICST_68661 CDS
T01023
Symbol
RRP6
Name
(RefSeq) exosome component 3'-5' exonuclease
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
pic
Scheffersomyces stipitis
Pathway
pic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PICST_68661 (RRP6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_68661 (RRP6)
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
PICST_68661 (RRP6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
4851204
NCBI-ProteinID:
XP_001387875
JGI:
68661
UniProt:
A3GG05
LinkDB
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Position
1:complement(1188690..1191113)
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AA seq
792 aa
AA seq
DB search
MSQPKDIHEAVLPKVMQTVRAASALAAQDVNFYKSVDADLAQKIDTSARGVLDIANKLIR
NVGPTEETSSSIRFGIDNISSESDWKPIANVLDSIFENIDSAFDQAIRAKNGRKDDNSNS
KNLQYLEDGNDVNSKHSGKRITKPQLSFRVPVDNSESHPFKPKLTCKPNGLKSFEESVEL
KSPEPNYENSIEIVDPAFYPQPYEYEIDTQPYPASILEKSEPIAPQDWTSTTATWVDTVE
ELQKMVEELKKSSEIAVDLEHHDYRSYYGIVCLMQISNRDQDWIIDTLALRDDLECLNTV
FTNPHIVKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASKSLGFPKFSLAYLLETFAHFKT
SKKYQLADWRIRPLSPPMMAYARSDTHFLLSIFDQLKNKLIDAGNEKLQRVLFDSRQVAK
RRFEYTPFRPLTNNINSRVSCPVMASNPREPFSSIMVQYNVPSHKKSVVEALYNWRDRIA
KIEDESVRFVMPNQLLVNLANLNQPVDVAKVLGASHFVSEHVRLNAKEVAELLENTLKLA
SDNDWDLVDKWNDAQNGRSVAEVDYSNIDEDVAEQTGESFDLLCQSLDVLLGNSTSTSLV
SKSTRLFSNIYDNSAQQTLEIDPEKSVVVKHDFGSEYNSRLVEVWNGLQELERSQSMTVS
TEVAEEADEEQEIAEESQPAVEIQPIQPVISFKEDKLDPNEIVTIRKKKHGVQQKKNPQT
TLKQLEGPVLDFATSNKVMLDTGKDRYNKKKENQKKRSFDPYSKESEGPKPAKKTRKLNE
GKSSTFRNTRRG
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaacccaaggatatccatgaggctgtcttgccgaaagtgatgcagactgttcgt
gctgcttcggctctagctgctcaggatgtgaacttctacaaatcagtggatgctgatttg
gcacagaagattgatacatctgccagaggtgtcttggacatagcgaacaaattgatacgg
aatgtgggtcccactgaagaaaccagtagtagcatcagatttggaattgacaacatttct
agtgaatcggactggaagcctattgccaatgtgcttgatagcatttttgagaatatcgac
agtgcatttgaccaggctatcagggccaagaatggaaggaaagatgataacagcaacagt
aagaacttgcagtacttggaagatggcaacgatgtcaatctgaagcattctgggaagagg
ataacgaagcctcaactcagtttcagagtaccagtagacaactcagaatctcatcctttc
aagcccaaactcacttgtaaacccaatggcttaaaaagctttgaggaaagtgtagaattg
aagagtccagagcccaattatgagaattctatcgagattgtcgaccctgcattctatcca
caaccatatgaatatgagattgacacacagccctatcctgcttcgattcttgagaaatca
gaaccaatagctccacaagactggacttcaaccacagccacttgggtagacactgtggaa
gagttgcagaagatggtagaggagttgaaaaaactgtcagaaattgcagtagatttggaa
catcacgattaccgttcttactacggaattgtatgtttgatgcagatatctaatagagac
caagactggataattgatacgttggctctccgtgacgatttggagtgtctcaacacagtt
ttcaccaatcctcacattgtcaaagtctttcacggtgcgtttatggacatcatctggttg
cagagagatcttggcttgtacatagtttctttgtttgacacctaccatgcctcaaagctg
ttgggatttcctaagttttcattggcctatttgttagagacatttgcccacttcaagaca
tccaagaagtaccagttagccgactggcgaatcaggccgcttctgcctcccatgatggcc
tacgcaagatctgatactcatttcttgttgagcattttcgaccagttgaagaataaactt
atagatgctggaaacgagaagcttcaaagagtattgtttgattcgcgtcaagtagccaaa
agacgtttcgaatacactccattcagacctttgaccaataatatcaacagcagggtttcc
tgtcctgtaatggccagtaatccccgggagcctttctcatctatcatggtgcaatacaat
gtgccttctcataaaaaatcagtagttgaagctttgtacaattggcgagaccgtattgca
aagatcgaagacgaatctgtccgtttcgtgatgccaaaccagctcttggtcaacttggcc
aacttgaatcaacctgtggatgttgcgaaagtattgggggcttctcattttgtgtccgag
catgtgagattaaacgccaaagaagtagcagagttgcttgaaaacacattgaagttggct
tccgacaacgactgggacttggtagacaaatggaacgatgcccagaatggaaggagtgta
gcagaggtagactattcgaatattgatgaagatgttgcagaacaaacaggcgaaagcttt
gaccttctttgtcaaagcttggatgttttattaggcaattctaccagcacatcgttagtt
tctaaactgactcgtttgttctctaatatctacgataattctgcacagcaaacgctcgaa
atcgatccagagaagtctgtagtcgttaaacacgactttggcagcgaatacaattcaaga
cttgtagaggtttggaatggtcttcaagagctcgagagatcacagtctatgactgtctcc
actgaggttgctgaagaagcagacgaagaacaagaaatagctgaggaatctcaaccagca
gtagaaatccagcccattcaaccagttattctgttcaaagaagataaactcgatccaaat
gaaattgtcactattcgtaagaagaagcatggggttcaacaaaagaagaatcctcaaact
acattgaaacagttagaaggcccagtattggactttgctacatccaataaagtcatgctt
gacactggcaaggacaggtataataagaagaaggaaaaccagaagaaacgttcatttgac
ccatactccaaggagagcgagggtcctaagccagccaaaaagacgagaaagttgaacgag
ggtaagtcgtctactttcagaaatacgagaaggggatag
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