Scheffersomyces stipitis: PICST_70277
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Entry
PICST_70277 CDS
T01023
Name
(RefSeq) ribosomal RNA processing
KO
K12586
exosome complex component RRP43
Organism
pic
Scheffersomyces stipitis
Pathway
pic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PICST_70277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_70277
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PICST_70277
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
Pox_C7_F8A
Motif
Other DBs
NCBI-GeneID:
4836782
NCBI-ProteinID:
XP_001383248
JGI:
70277
UniProt:
A3LQK1
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Position
2:complement(2575747..2576889)
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AA seq
366 aa
AA seq
DB search
MAELKQVSFPPDVLARIAPDISLHRHLSVGLRPNLRNFTEFKPVDIASNNEITDSNANVF
GSSVIKSGSTTVINTITLGVVEVNRSANAATHSNNDFTTVYPVVEIARGRSGAPTDEEMI
LSQTLHESILHSRLIPKTALSIKNYGSAVYDAATGKYTIYYPDLNPDEFELINFNHSKSY
SFVLLSHIKIFSKQVSTSSLFDLCHMSTIQALSRLALPRVYISDTSSGTKVSIRSRSSNT
RGLVGVSKSNINLDSNKDLYYPLSLNGATVDGDAMVDSEGPFDASGVSSNFGIISIPEEE
DRKTVLLADLEGEAEESSILSRLSIIATKDNVIKKISLVNGDSDSEITLDLLKQAIEISK
IRAQQM
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atggccgaattgaaacaggtttcgtttcctcccgatgttcttgctcggattgcccccgat
atctctctccacagacatttgtctgtaggcttgaggccaaacttgcgaaatttcactgaa
ttcaagccagtggatatcgcttccaataacgaaataaccgattccaacgccaatgtgttt
ggctcgtccgtcataaaaagtggaagcactacagtaatcaataccattaccttgggtgtc
gtagaagtcaacagaagtgccaacgctgctacacatagtaacaatgatttcaccacagtg
tatcctgtggttgaaatagctcgtggcaggtcaggtgcccccaccgatgaagagatgatt
ctatctcagacgttacacgaaagcatcttacatagtcgtttgattcctaaaacagcattg
tctatcaagaattacggctctgctgtctatgatgctgctaccggcaaatataccatctac
tacccagacttgaatccagacgaattcgagctcatcaatttcaaccatagcaagtcgtat
tcgtttgtgctattgtcgcatatcaagattttctccaaacaagtgtctacgtcgtctttg
ttcgacttatgtcacatgtctactatccaagcattatccagattggctcttcccagagta
tacatttccgatacctcaagcggaaccaaggtatctatcagatcgcgttcgtctaacact
cgcggattagtaggggtcagtaaatcaaacattaacctcgacagcaacaaggatttgtac
tatcctttgctgttgaatggggccacagttgacggagatgccatggtggactccgaaggg
ccgttcgatgcctcgggggtttcgtccaattttggtataatatcaattccagaagaagag
gatcggaagacagtgttgttggctgatttggaaggagaggccgaggagtcgagtatcttg
tctcgtttgtctataatagctacaaaggataatgtcatcaagaaaatcagtcttgtgaac
ggagacagtgacagcgagatcacacttgatcttcttaaacaagcaattgagatctccaag
atcagagctcagcaaatgtaa
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