Scheffersomyces stipitis: PICST_75374
Help
Entry
PICST_75374 CDS
T01023
Symbol
RPO21
Name
(RefSeq) DNA-directed RNA polymerase II largest subunit (RNA polymerase II subunit 1) (B220)
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pic
Scheffersomyces stipitis
Pathway
pic03020
RNA polymerase
pic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PICST_75374 (RPO21)
09124 Replication and repair
03420 Nucleotide excision repair
PICST_75374 (RPO21)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pic03021
]
PICST_75374 (RPO21)
03400 DNA repair and recombination proteins [BR:
pic03400
]
PICST_75374 (RPO21)
Enzymes [BR:
pic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PICST_75374 (RPO21)
Transcription machinery [BR:
pic03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
PICST_75374 (RPO21)
DNA repair and recombination proteins [BR:
pic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
PICST_75374 (RPO21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
4852036
NCBI-ProteinID:
XP_001386996
JGI:
75374
UniProt:
A3GID7
LinkDB
All DBs
Position
1:3464674..3469963
Genome browser
AA seq
1739 aa
AA seq
DB search
MSRQFPYSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQTTKTPREGGLNDPRLG
SIDRNFRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDENN
PAMAQAIKIRDPKKRFNAVWQLCKAKMVCETDIIEEGATETTTRGGCGHTQPTIRRDGLK
LWGTWRHNKNFEENEQPERRLLTPSEILNVLKHISSLDCLRLGFNEDYARPEWMLITVLP
VPPPPVRPSIAFNDTARGEDDLTFKLADVLKANINVQRLEMDGSPQHVISEFEALLQFHV
ATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLD
LDQVGVPISIARTLSYPEVVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKR
AGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNA
DFDGDEMNLHVPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNF
IDYDQVMNMLYWIPNWDGVIPPPAIAKPKPLWTGKQLLSMAIPKGIHLQRFDGGKDLLSP
KDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPRVCAQLFSSIQKVTNYWLLHN
GFSIGIGDTIADVSTMKDITSTISEAKIKVQEIILDAQSNKLEPEPGMTLRESFEHNVSR
VLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFS
DRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRR
LVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSNDSFERRFRID
VLDSSKSIPESLLESGKEIKGDVKLQKVLDEEYKQLLDDRKYLREVCFPNGDFSWPLPVN
LRRIIQNAQQIFHNGRYKASDLRLDEVIVGVRSLCEKLLVVRGDTELVKEAQANATLLFQ
CLVRSRLASRRVIEEFKLNRSSFEWVVGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQM
TLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDPALSDDIEKAKVVQSAIE
HTSLKNVTSSTEIYYDPDPRTTVIEEDYDTVEAYFSIPDEKVEESIEKQSPWLLRLELDR
AKMLDKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVRDPKSLDEEADAEEDQ
ILKRIEAHMLESISLRGIPGITRVFMMQHKVNTPDATGEFKQGKEWVLETDGVNLADVMA
VPGVDSSRTYSNNFIEILSVLGIEATRAALFKEILNVLSFDGSYVNYRHMALLVDVMTSR
GHLMAITRHGINRSDTGALMRCSFEETVEILLEAGASAELDDCRGISENVMLGQMAPLGT
GAFDVMLDDKMLQTAPSNVAVAAGNDEFADDGGATPYREYDMEDDKIQFEEGAGFSPIHT
AQVQDVSGGLTSYGGQPTSPSATSPFSYGSTSPSFGGSVSPGYGGTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPQYSPTSPQYSPTSPSYSPTSPQYSPTSPQYSPGSPEYSPNSPKTEDKKNED
NT seq
5220 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgccagttcccttactcaagcgctccactccgttccgtcaaggaagttcagttc
ggcttgttgtcgccagaagaagtgcgtgccatttccgtagccaagattgaataccccgag
accatggaccagaccaccaagactcctagagaaggtggtttgaacgatcctcgtttaggt
tcaatcgacagaaactttagatgtcagacctgtggcgaggatatggccgaatgtccgggc
catttcggtcacattgagttggccaagccggtgttccacattgggttcatcgccaaaatc
aagaaggtatgtgagtgtgtatgtatgcactgcggaaagttgttgctcgatgaaaacaac
cccgccatggctcaagctatcaaaataagagaccccaagaagaggttcaacgccgtctgg
cagttgtgtaaggctaaaatggtttgtgaaaccgatatcatagaagagggagctactgaa
accacaaccagaggtggttgtggtcatactcagcccaccattcgtagagatgggttgaag
ttatggggtacctggagacataacaagaattttgaagaaaacgaacagcctgaacgtaga
ttgttgactccttcagagatcttgaatgttcttaaacatataagctccttggactgtttg
agacttggcttcaacgaggactatgccagaccagagtggatgttgatcacagttttgcct
gtgcctcctccacctgtcagaccttcgattgctttcaacgacactgccaggggggaagat
gatttaactttcaagttggccgatgttttgaaagctaacatcaatgtgcaaaggttggaa
atggacggctctcctcagcatgtgatctctgagttcgaggctttgttgcaattccacgta
gccacatatatggataacgatattgctggccagccccaggctctccagaagacaggtcgt
cctatcaaatctattagagcaagattaaagggtaaggaaggtagattgagaggtaacttg
atgggtaagcgtgtcgacttttccgctcgtaccgttatttcgggtgatccaaatcttgat
ttagaccaggttggagtaccaatttccatcgctcgaacattgtcgtaccctgaggttgtc
accccatacaatattcatagattgactgagtacgtcagaaacggtccaaacgaacatcct
ggtgccaagtacgttatcagagacaccggtgatcgtatcgacttgcgttataacaagaga
gctggtgacattgcattacaatacggctggaaggttgaacgtcacttgatggacaatgac
cctgtgttgttcaaccgtcaaccctccttgcacaagatgtccatgatggcccacagagtt
aaagttatgccatattccacatttagattgaatttgtcagtcacatcgccatataacgcc
gattttgatggtgatgaaatgaacttgcatgtacctcaatctccagagactagagctgaa
ttgtcggaaatttgcgctgtacctcttcaaattgtttctccacaatcgaataagccagtt
atgggtattgtgcaagatacgttgtgtggtattcgtaagatgaccttgcgtgacaacttc
attgattacgaccaagttatgaatatgttatactggattccgaactgggacggtgtgatt
cctcctccagctattgctaagcccaaaccattgtggaccggtaagcagttgttgtctatg
gccattccaaagggtatacacttgcaaagatttgatgggggaaaagatttgttaagtccc
aaggacaccggtatgttgattgtagatggtgagatcatgtttggagttgtcgataagaag
acggttggtgccacaggtggtggtttaattcacactgttatgagagaaaaaggccctcgt
gtgtgtgctcagcttttcagctctattcaaaaggtgaccaactactggttattacataat
ggtttctctatcggtattggtgataccattgctgatgtaagtaccatgaaagatatcact
tcaaccattagtgaggccaaaatcaaggtgcaggaaatcatcttggacgcacaactgaac
aagttggaacctgaaccaggtatgacattaagagaatcgttcgaacataacgtttctcgt
gtccttaatcaagctcgtgataccgctggtcgttccgcagaaatgaatttaaaggactta
aataacgtcaagcagatggtggtttcaggttccaagggttctttcattaatatctcgcaa
atgtctgcatgtgtgggtcaacagattgtagaagggaagagaattccctttggtttttct
gatcgtaccttgcctcatttcacaaaggatgattactctcccgagtcgaagggttttgtt
gaaaattcttacttgagagggttgactcctcaagaattcttcttccacgccatggctggt
agagaaggtcttatcgatactgccgtcaaaactgccgaaactggttatattcaacgtcgt
ttggtgaaagctttggaggatatcatggtccattacgatggtacaaccagaaactccttg
ggtgatatcattcaattcgtctatggtgaagacggtatcgatggtacccaagttgagaag
caatctgttgatactattccaggatccaacgatagtttcgaacgtcgtttcagaatcgac
gtcttggactcttcaaaatccattccagaatcattgttagaatccggcaaggaaattaag
ggtgatgtcaagttacagaaggttttggacgaagagtacaaacagctcttggatgaccgt
aagtacttaagagaagtctgtttccctaatggtgacttctcatggccattaccagtgaat
ttgcgtcgtattattcagaatgctcaacagattttccacaatggtcgttacaaggcttct
gatttgagattggatgaagttatcgttggcgttagatctctttgtgaaaaattgcttgtt
gttcgtggtgatactgaattagtcaaagaagcccaagcaaatgccacattattattccaa
tgtttggttagatctagattggcatcacgtagagtgattgaagaattcaagttgaacaga
tcttcatttgagtgggttgtgggtgaaattgaaactcaattccagaagtccattgttcac
cctggtgaaatggttggtgtgatcgcagcacagtccatcggtgaaccagccacccaaatg
accttgaacactttccattatgccggtgtgtcttctaagaacgttactttgggtgttcct
cgtcttaaggaaattcttaatgttgctaagaacattaaaactcctgcattgactgtgtac
ttagatccagcgttatctgacgatattgaaaaggccaaggttgtccaatctgcgatcgag
cacacaagtttgaaaaatgtgacttcatccacagaaatctactatgatccagatccaaga
acaactgtaatcgaagaagattacgataccgtggaagcctacttctcgattcctgatgaa
aaggtggaagaatctattgaaaagcaatctccttggttacttcgtttagaattagatcgt
gccaagatgttggataaacaattgaccatggctcaagttgctgaaaagatttcccagaac
tttggtgaagatttgttcgtcatatggtctgatgatactgctgataagttgatcattcgt
tgtcgtgtcgttagagatccaaagtctcttgatgaggaagcagatgctgaagaagatcag
atattgaagcgtatcgaagctcacatgttggaatcaatttctttacgtggtatcccaggt
atcacaagagttttcatgatgcaacataaggtcaacacccctgatgccactggtgaattt
aaacaaggaaaggaatgggtattggaaactgatggtgtcaatttggctgatgtcatggca
gttccaggtgttgactctagtcgtacctactccaataacttcattgaaatcttgtctgtt
cttggtattgaagccacacgtgcagccttgtttaaggaaattcttaatgtgctttcattc
gatggttcttatgtgaactatcgtcatatggctcttttggttgatgttatgacttctcgt
ggtcacttgatggccattacacgtcacggtattaacagatcggacaccggtgctttgatg
cgttgttctttcgaagagactgttgaaatattgttggaagctggtgcatctgccgagtta
gatgattgtcgtggtatttctgaaaacgtaatgttaggccaaatggctccattaggtact
ggtgctttcgatgttatgcttgacgacaagatgttgcaaactgctccttcaaatgttgca
gttgctgctggaaatgacgaatttgctgacgatggaggtgccactccatacagagagtac
gacatggaagatgacaagattcaatttgaagaaggagcaggtttctcgccgattcacact
gcacaagttcaagatgtttctggaggacttacttcttatggaggacagccaacttctcct
tctgctacctcgccatttagttatggaagtacttctccatcatttggaggttcagtgtcg
ccaggttacggaggaacttccccaagttattctccaacatcgccaagctactcacctact
tctccaagctactcacctacatctccaagttactctcctacgtcaccagcatattcacct
acttccccatcttactcacctacttccccaagctactcacctacttccccaagctactca
cctacttccccaagctactcacctacttccccaagttactctccaacttcgccaagttac
tcacctacttctccaagttattcgcctacttctccttcttattctcctacttctccttct
tactctcctacatctccttcttactcacctacttctccaagctactcacctacttcccca
agttactcgccaacgagtccctcatactctcctacttcgcctagttactctccaacttcg
ccaagttattcaccaacttcaccacaatactcaccaacctctcctcagtactctccaacc
tcaccactgtactcgccaacctcaccacaatactcccctacttcgccacagtattcacca
ggatctcctgaatattcgcctaattcgccaaagacggaggataagaagaacgaagactag
DBGET
integrated database retrieval system
