Scheffersomyces stipitis: PICST_75782
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Entry
PICST_75782 CDS
T01023
Symbol
NOT5
Name
(RefSeq) negative transcriptional regulator
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pic
Scheffersomyces stipitis
Pathway
pic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PICST_75782 (NOT5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_75782 (NOT5)
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PICST_75782 (NOT5)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PICST_75782 (NOT5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
4837356
NCBI-ProteinID:
XP_001382683
JGI:
75782
UniProt:
A3LQB9
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Position
2:2384466..2386535
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AA seq
610 aa
AA seq
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MSTRKLQQEFDKTNKKIAEGLSVFDDIYDKLMTSEISSQKEKLESDLKKEIKKLQRSRDQ
LKQWLGDSSIKLDKDLLQENRTKIEHAMDQFKDLEKSSKIKQFSNEGLELQSQRTKSSRF
GPEDAKRADACNYVSDIIDLLNQQNDELDQNVNSLLVQLKKAKSSNQAPIQSSIEDERYK
IERNNTHLTKLESILRNLENDRLDPQKVDDIKDDIEYYVENNQEEDYVEYDDFYDALEID
DEATLEVQGSLAQMAVDTQEYEPKIDAPERKDEPVTPAKPESKPLPTSAASTTTPHKPSP
SSTAAGGNTPTKKAHIVPAPAPPPIAYSNVIKAAQMNASVAAVSGSPAASAATLSGASPV
VSGKAPPGLNHLDKSPSVSPNVTNSKIAEEDTPKLIQAQTAQNQLQLQQHHQQQPPANSQ
SPVGTEEYKGLYDTVSRFTTLPQSRLQNPLPFQAIAALLESSLLNCPDSFDAEKPRQYIP
VNVHPSSIDYPQEPMYELNSSNIMRKFDNDTLFFCFYYSEGVDNLAKWNSAQELSRRGWI
FNTELKQWFLKDTKNGGKNRSMSVIQKEEEQDSVDDSEKEENYKYFDYEKTWLTRRRENY
KFTNNLRETF
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgagtacgagaaaactacaacaagagttcgacaagacgaacaaaaagatagccgaaggg
ttgtcggtgtttgacgacatatacgacaagttgatgacatcagaaatcagttctcaaaaa
gagaagttggagtcagacttgaagaaagaaatcaagaagttgcagagactgagagaccaa
ttgaaacaatggcttggtgactcaagtattaaattagacaaagacttgttgcaagagaac
agaaccaagatcgagcatgctatggaccagtttaaagatttggagaagtcgtccaaaatt
aagcagttttccaacgaaggattagaattgcagagtcaaaggacgaaatcatcgagattt
ggccctgaagatgccaaaagggctgatgcctgtaattatgtgagcgacataatcgatttg
ttgaaccagcaaaatgatgaattagaccagaacgtcaacctgctcttagtgcaattgaag
aaagccaagtctctgaaccaggctcctatccagtcgtctatagaagacgaaagatacaag
atagaacgtaacaacacgcatttgacgaaactcgagagcatcttacgaaacttggagaac
gaccgcttggacccccagaaggttgacgacatcaaggatgacatagaatactatgtagaa
aacaaccaagaggaggactatgttgagtacgacgacttctacgatgccttggagatagac
gacgaagctactttagaagtgcagggttctctagctcaaatggctgtagatacccaggaa
tacgagcctaaaatcgatgctcctgaacgaaaagacgagcctgtgactccagcaaaacct
gaatccaagcctcttcccacttctgctgcatcaactactactcctcataagccgtctccc
agctctacggctgctggagggaacactcctaccaaaaaagctcacattgtgcctgctcca
gcacctcctccaattgcctactctaatgtaatcaaggcagctcagatgaacgctctggtg
gcagctgtttccggctctcctgccgcgtcagctgctactttatcaggtgcctcgccagta
gtttcgggcaaagcacctccaggcttgaatcatctcgacaagtcaccttccgtatctcct
aatgtgaccaatctgaagatagctgaggaagacacgcctaagttgatacaagcacaaaca
gctcagaaccaacttcaactccagcagcaccatcagcaacaacctcccgctaactcacaa
ctgcctgtcggaacagaagagtacaagggtttgtatgatactgtgtcacgtttcacgacg
ttgcctcagtctagattacagaacccattgcccttccaggcgatagctgcgttgttagag
tcgtcattgctcaattgccccgattcttttgatgccgaaaagccaagacagtatattcct
gtcaacgtgcatccctcgtccatcgactatccccaggagccaatgtacgagttgaattct
agcaacatcatgagaaaatttgacaacgatacgttgttcttctgtttctactacagcgaa
ggagtggacaacttggccaagtggaactcggcacaagaattgtctagacgtgggtggatc
ttcaacaccgagttgaagcagtggtttttgaaggacaccaagaacggaggcaagaaccgt
tcgatgtcggttatccagaaagaagaagagcaggacagtgtagacgactcagaaaaggag
gagaactacaagtactttgactacgaaaagacgtggttgaccagaagaagagaaaactac
aagttcaccaacaacttgagagaaacattttag
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