Scheffersomyces stipitis: PICST_80647
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Entry
PICST_80647 CDS
T01023
Symbol
PAT1
Name
(RefSeq) topoisomerase II- associated protein
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pic
Scheffersomyces stipitis
Pathway
pic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PICST_80647 (PAT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_80647 (PAT1)
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PICST_80647 (PAT1)
mRNA degradation factors
5'-3' decay
Decapping complex
PICST_80647 (PAT1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
CCDC53
Motif
Other DBs
NCBI-GeneID:
4850904
NCBI-ProteinID:
XP_001387718
JGI:
80647
UniProt:
A3GF55
LinkDB
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Position
1:complement(<386681..>389473)
Genome browser
AA seq
813 aa
AA seq
DB search
MSFFGFDPTAPPGARPNEQAVSHDFQDTYDGLGELEDGDDIYNDETFGAAGSVGKDFDFG
SASGHIQPGAGLPAPQTISYAQAAAQSNDDEFMADLWGANAPAQASSDAVVGAVTGEKKI
LSLEEIEAQLTSIDQQQRQLPQQPSQFAPPPFGYPGMMAPPQYGGYMVPPGGFMPPPPGQ
YAPQFPIMQGLPGQLPPQLQQPIPQHPQQQQQPQQPQQPQQPQQPQQPQQPQQPQDAVHQ
KSSAKADLSQFPVLGSKDVERQHQQPHQQSSEDSQFQSQSQKSQQPLPAQSQEFNQFHRD
NRHHNHHHHHQQQDLTPEQQERAARRQEKVSRIMRYSGIMNPKDKDFVTRFQLSQIVTED
PYNEDFYAQVYKVIHPKNSSLQETSQQHNSIAQAYLEQSGHRLGGRYKRADVALQRMQQQ
VQKAVTVAKERPKLTQYAREGALGKISFGTGKKPRQQLEIISKAAQRKLEKEKKELEGGD
AVSDELGEEAVAKKNRSPSISAPRVIKKYSKKDIMSILEGIITELMSVESESRTNANVDT
TQLWESLRVLEQSTSFGEDEEVNPFIQCLNFNKGLKILSRLFKFLSREQVLTIVTLIMSN
LENLSVIKNGSYTTYETKKVPETIVKLVEVYSMTFSKVLMNAVLDFKFNEIIGLLVILIE
HNNVAYVSTTKIGLTILTTLLSRAELIIGEGTISATDLSEWSSCYDELFTSLESRIAAIF
PPHPEDIDDGSSRENYVWQFLATLSLGGKLNHQRIIVDEVRDEIFGVMSRAKAIDDADAD
NLYKKSNLLNNLNMYLVVMGLVADETEIKELQT
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtccttctttggttttgaccctacggctccaccgggtgccagaccaaacgagcaggct
gtttctcatgatttccaggacacctacgacggcttgggagaattagaagatggcgacgat
atctacaacgatgagacgtttggcgctgcaggctccgtcggtaaagattttgactttggc
agtgcttcaggccacatccaacctggcgcggggctaccagctcctcaaaccatctcttat
gctcaagctgcagcacagtcgaatgacgatgagttcatggctgatttgtggggagccaat
gctcctgctcaggcttcgtctgatgccgttgttggtgctgttactggcgaaaagaagatc
ttgtctcttgaagaaattgaagcccagctcacttctatcgaccagcaacagcgtcaactc
cctcaacaaccttcccagtttgctcccccaccttttggttaccctggtatgatggctccc
ccacaatatgggggctatatggttccacctggaggatttatgcctccacctcctggccaa
tacgctccgcaattccctatcatgcaaggattgcctggccagttgcctccccaacttcag
caacccattccacaacaccctcaacagcagcagcaacctcaacaacctcaacaacctcaa
caacctcaacaacctcaacaacctcaacaacctcaacaacctcaggatgcagttcatcaa
aaatctctggctaaagctgatttgtctcagttcccagttttgggctccaaggacgtagaa
agacaacatcaacaacctcaccaacaatcttctgaggattctcaatttcagtctcagtct
cagaagtcgcagcagcctcttccagctcaatctcaggaatttaaccagttccacagagat
aaccgtcatcacaaccaccatcatcaccaccagcaacaggacttgactcctgagcagcag
gaaagagcagccagaagacaggagaaggtttcacgtatcatgagatactctgggatcatg
aatccaaaggataaggactttgttacacgtttccaattgtcgcagattgtcactgaagac
ccctacaacgaagacttctatgcccaagtctataaagtgattcatcctaagaattcttct
ttgcaggaaaccagccagcaacacaactccattgctcaggcttatcttgagcagagtggc
cacagacttggtggtcgttacaagagagccgatgtagctttgcagagaatgcaacagcag
gtgcaaaaggctgttactgtggccaaagaaagacctaagttgacccagtatgctcgggag
ggtgccttgggtaaaatttcctttggtacaggtaaaaagccaagacagcagttggaaatt
atcagtaaggctgcgcagagaaaacttgaaaaggagaagaaggagttagaaggcggtgat
gccgtcagtgacgaactcggtgaagaggctgttgcaaagaagaacagatctccttcaatt
tcagctcctagagtaatcaagaaatactccaagaaggatatcatgagcatcttagaaggc
atcattacagagcttatgagtgtagagagcgagtctagaactaatgccaatgtcgacact
acacagttgtgggaatcattgagagtattggaacagtctacttccttcggtgaggacgaa
gaagtcaatcctttcatccaatgcttgaacttcaacaagggactcaagatcttgctgcgt
ttgttcaagttcttgtctagagaacaagtcttgactatcgtcactttgatcatgtccaac
ctcgagaacttgtctgttataaagaatggttcgtacacaacatacgagaccaaaaaagtt
cccgagacaatcgtaaaattagtggaagtatactcaatgacattctctaaggtgttgatg
aatgccgtgttagatttcaaatttaatgagattatcggcttattagtgatcttgatagaa
cacaacaacgttgcttatgtctcgactaccaagatcggtttgacaatcttgactactttg
ttgtctcgtgcagaattaatcatcggtgaaggtacaatctccgctactgatctctcggaa
tggtcttcgtgttatgacgagctcttcacttctttggaatccagaatcgcagcaatcttc
cctcctcaccctgaagatattgatgatggctcttccagagaaaactatgtctggcaattc
ttggccactttgtctcttggtggtaagttgaatcatcaaagaatcattgtagatgaagtg
agagatgagattttcggagtcatgagtagagccaaggctatcgatgatgccgatgctgac
aacctctacaagaaactgaacttgttgaacaatttaaatatgtatttggtcgtcatggga
ttggttgcagatgagactgaaatcaaggagttgcagacctga
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