Scheffersomyces stipitis: PICST_81012
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Entry
PICST_81012 CDS
T01023
Symbol
MSH6
Name
(RefSeq) Mismatch repair ATPase MSH6 (MutS family)
KO
K08737
DNA mismatch repair protein MSH6
Organism
pic
Scheffersomyces stipitis
Pathway
pic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PICST_81012 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pic03400
]
PICST_81012 (MSH6)
DNA repair and recombination proteins [BR:
pic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
PICST_81012 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Caulimovir_coat_dom
AAA_29
Motif
Other DBs
NCBI-GeneID:
4851846
NCBI-ProteinID:
XP_001387139
JGI:
81012
UniProt:
A3GHU7
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All DBs
Position
1:complement(2994912..2998707)
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AA seq
1212 aa
AA seq
DB search
MSKVRKPSTPLRSGSAAVKNGSASSSSKLKQSSLMSFFKPASKPDSEKTKDSANPTMTQP
PASSSPLRAKSEQSRQNSNEASDTLNTSVLASEADSHSDKENENQIMSEHNARKPKPLAE
NHLNSSPLVKRRSASRSVSYAESDSEDEAVNQTSRKRRKVIESDDDEEDDFKPAEEDDDD
DDMSDFIVDDDKESEPEIEEDDEDDFAEETPRSKKSKSKSSSSSSRSSPSKESSISSNVL
GDKFKAGSSYKATQPATKPKSITPVKTTPKKNFSKENEERYQWLVDVRDAEKRTTDDPNY
DPRTLHVPQSAWSKFTAFEKQYWEIKSKMYNTVVFFKKGKFYELYENDATIANTEFDLKI
AGGGRANMKLAGIPEMSFEYWAKEFISHGYKVAKVDQVESLLAKEMRGGGTKEEKIIKRE
LTGVLTGGTLTDMDMISDDMAVYCLSVKEEILDDGSKIFGVVFVDTATSEVNFIEFPDDA
ECTKLETLITQIKPKEILCMKGNLCSIAVKILKFNAQGHQIWNQLNPISEFWDYDTTCEN
LVSAKYYDAEDLDDYSNYPPTLIDYKDNHKVAFGAFGGLLFYLRSLKLDSSIMTLGHISE
YQISKNSSTHMLLDGITLNNLEILSNSFDGGDKGTLFKLINKASTPFGKRAMKSLVLHPL
MKINEINERYDAIEYLMNEGLELRSKLEQTLTSLPDLERLLARIHSKTLKFKDFLKVVES
FEGISKSLGPLHEFIPEESGALFKHLKSFPRELPELVSQWDDAFDREEAKKDVVVPTEGV
DAEFDDSQCKMKILEDKLEQYLKEYKRTYKSHEVVYRDSGKEIYLIELPNKLVKQVPNDW
QQMGSTSKVKRYWSPEVKRTARELMEQRELHKMVCESLKSRMYERFDAHYKTWLKAVHSL
GKIDCILALTRTSETIGYPSCRPEFVDSEKGQIEFRELRHPCFLASSDFIPNDVILGGSE
ANFGLLTGANAAGKSTLMRTTALAVILAQIGCFVPASSAKLSTVDKIMTRLGANDNIMQG
KSTFFVELSETKKIISNATTRSLVILDELGRGGSSSDGFAIAESTLHHLATHIQPLGFFA
IHYGTLGLSFQNHPQIKPLRMAIIIDNNSRNITFLYKLEEGTAPGSFGMNVASMCGIANT
IVDSAEVAAKEYEQTSKLKKTHKNNSLGLGLQSDFSWFAQGRTSILSSDILNYSEDVKQG
ALSSIFGMIEKL
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaggttcgcaaaccctccacaccattgagatctggttcagctgctgtgaagaat
ggctctgccagctcttcatctaaacttaagcagctgagcttgatgtctttcttcaagcca
gcttccaaaccagattctgaaaagacaaaagatagtgccaacccgaccatgactcaacct
ccggcttcatcctcgcccttgagagccaaatcggaacaatcaagacagaatctgaacgaa
gcttcagatacgttgaatacttctgtattggccagtgaagctgattctcattcagataag
gaaaacgaaaaccaaatcatgtccgaacacaacgctcgaaagcccaaaccgttggccgag
aatcacctcaattcaagtccgttagtcaaacgtcgttctgcatctcgtagcgtcagctac
gctgagtcagatagcgaagacgaagctgtcaatcaaacatcaaggaagaggagaaaggtt
atagaaagtgatgatgacgaagaggatgatttcaaaccggctgaagaagatgacgatgac
gatgatatgagcgacttcatcgttgatgatgataaggaaagtgagcctgagatagaagaa
gatgatgaagatgactttgcagaagagacgccaagatctaagaagtccaagtccaagtca
agttcgtcctcatccagaagctctccttcaaaggaatcttctatttccagtaacgttcta
ggcgataaattcaaggctggttcctcgtataaagccactcaacctgctactaagccaaaa
tctattactccagttaaaacaactccaaagaagaacttctccaaagaaaacgaagagaga
taccaatggctcgtagatgtcagagatgcagaaaagagaactacagatgaccccaactac
gatcctcgaacattgcacgtaccccaatctgcttggtcgaaatttactgcgtttgaaaaa
cagtactgggaaatcaagtctaagatgtacaacactgtagttttcttcaagaaaggtaag
ttctacgaattatacgaaaacgatgctacgattgccaacactgaatttgatttgaaaata
gctggcggaggacgggccaacatgaagttggcgggcattcctgagatgtcgtttgagtac
tgggcaaaagagtttattagccatggatacaaagtcgctaaagttgatcaagtagaaagt
cttttagcaaaagagatgagaggtggcggtactaaagaagaaaagattatcaaaagagag
ttgactggtgtcttgaccgggggcaccttaactgacatggatatgatcagtgatgatatg
gcagtatactgcttgagtgtcaaggaagaaatcttggatgacggaagcaaaatctttggt
gttgtgtttgtagatactgctacttctgaagtgaatttcattgagttcccagacgatgcc
gaatgcaccaagttggaaaccttgattacgcaaatcaagcccaaagagatcttgtgtatg
aaaggaaacttgtgttcaattgcagtgaagatattgaagttcaatgcacagggacatcaa
atctggaaccaattgaacccaatttctgagttctgggactatgataccacctgtgagaac
ttagtttcagccaaatattatgatgccgaggacttagatgattattctaactatcctccg
acattaattgattacaaagacaaccataaggttgcattcggtgcatttggtggtttgctt
ttttatttgaggtcattgaaattagatagcagtatcatgactttgggtcatatttcggaa
tatcagatttctaagaattcaagtactcatatgttattggatggtatcaccctcaacaat
ttggagatattaagcaactctttcgatggcggagacaagggtacgttgttcaaattgatc
aacaaggcttccacaccatttgggaaaagagcaatgaagtcattggtattacacccactt
atgaaaatcaatgaaattaatgaacgatatgatgccatagaatacttgatgaacgagggc
cttgaattgagaagtaaattggaacaaacattgacttccttgccagatttggagaggctc
ttggctagaattcatagtaaaactttgaaattcaaggatttcttgaaagtagtagaaagt
tttgaaggtatttctaaatcattagggccattgcatgagtttattcctgaggaatcagga
gctttgttcaaacacttgaagagctttccaagggaacttccagaacttgtttctcagtgg
gacgatgcatttgacagagaagaagcaaagaaagacgttgttgtcccaactgagggagtg
gatgctgaatttgacgactcacaatgtaaaatgaagattttagaagataagctcgagcag
tacttgaaggaatacaagaggacctacaaatctcatgaagtggtctacagagattccggt
aaggaaatctacttgattgaacttccaaacaagttggtcaagcaagttccaaatgactgg
caacagatgggatcaacttctaaggtgaagcgatactggtcgccagaagttaagagaact
gcaagagaattgatggaacagcgtgaattgcacaagatggtatgtgaatcattgaaaagt
agaatgtacgagagatttgacgcacattataagacgtggttgaaagcagttcattcatta
ggtaagattgattgcatacttgcattgactagaacttctgaaaccattgggtatccatca
tgcagaccagagtttgttgattcggaaaaaggtcaaattgaatttagagaactcagacat
ccttgtttcctcgcaagctctgattttattcctaatgatgttatccttggaggatcagag
gcaaattttggattattgacaggagcaaatgctgctggtaaatcaaccttgatgagaaca
acagctttggcagtgatattggcccagattggttgttttgtccctgcgtcgagtgccaaa
ttaagcactgttgacaagattatgactcgtttaggggctaatgacaacatcatgcaaggt
aaatctactttctttgtagaattatcagaaactaagaagatcatcagcaacgcgactaca
agatcgttggtcattttagatgaattgggaagaggtgggtctagtagtgatggctttgct
atcgcggaatcaactttgcaccatttggcaacgcacattcaaccgctaggcttctttgca
atacactatggtacgttgggattgtcgttccaaaatcatccccaaattaagccactcaga
atggcaatcataattgacaacaactctagaaatatcacatttttgtacaaacttgaagaa
ggtacagctccaggctcatttggtatgaatgtagcttccatgtgtggtatagcgaatacc
attgtggatctggcagaagtggcagccaaagaatacgaacagacgtcgaagttgaagaag
actcataagaataacagccttggtttaggattgcagagtgacttttcttggtttgctcaa
ggtcggacctccattttgagtctggatattttgaactacagcgaggatgtcaagcaagga
gctctctcaagtatttttggaatgatcgaaaagttatag
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