Scheffersomyces stipitis: PICST_81669
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Entry
PICST_81669 CDS
T01023
Symbol
NMD2
Name
(RefSeq) protein involved in decay of mRNA containing nonsense codons
KO
K14327
regulator of nonsense transcripts 2
Organism
pic
Scheffersomyces stipitis
Pathway
pic03013
Nucleocytoplasmic transport
pic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PICST_81669 (NMD2)
03015 mRNA surveillance pathway
PICST_81669 (NMD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_81669 (NMD2)
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
PICST_81669 (NMD2)
mRNA cycle factors
P-body specific factors
PICST_81669 (NMD2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Upf2
MIF4G
DUF6942
Motif
Other DBs
NCBI-GeneID:
4836634
NCBI-ProteinID:
XP_001382835
JGI:
81669
UniProt:
A3LN72
LinkDB
All DBs
Position
2:complement(<391400..>394566)
Genome browser
AA seq
1028 aa
AA seq
DB search
MEKSELDIRRRQLASVNREAWSGEYVFSTANKLDSSLKKNTAFIKKVRTGINSDQYKSIL
KDIETVSLEKYISEIITSLSEALFKVSRSDDILAAMEVVSALHQRFPTQLAPYLLINLLV
GVANPIRAHQSDREKEEIARISRQKNVLRLIGEFYIIGIFRKLNDCTKDMVPDDILRKFS
KSAAEPIVTPVLKDVLNFEINLGNSLGVLQAFLKRFQHIIYDENNDLLSSEVKNVWRQIF
TIYTKAVFSIQVDLNRQAISVASRNKKAAIRTGKILDEHTSELNEVSELLEKFKSAAEFL
GGVVGMTPPKLFTENSSQVSESSTVEVVKQKSLNEDELGGIWDDIREKNFYTKIPTLEEL
QEQYPPTEINTTKDGEKIEYFLSKLENVPQSNVDQLVVDFNDLHLNNKATRNRILKFLIE
TPEISNLKYYCRFLKVNESNLSDLIHELIEFLDKGFRSQIYHNKLNFKNIYFFVELIKFK
MIPTHIIFHKIRTLTLNITSSNNIDILSVFYEHAGRFLLNETEYRELMLSMISLLKEKKK
AQNLTIDEKMAIRNLLVVIDPPITKVNNLQQPKFTVVQQYIRRLIQVELTNKTASQVSVE
LRRVDYRADKDNYFVLIDCLSSPEDLNYDNIPSLAEILEKMSKKNKHVLARTVDTIIEKI
IRGLEENDYRLNRVRMAHIKYISDIFNYKLVNFKFIRDLLYKIVTYGHPNKQPLPGNRSI
SIDLPDNYFRVQLCCLLLMSIGSVVEVGRRRKKIQKNSEQEDVNISALRDFLIFLQYYTY
CKEQPIPMELEFRINDVLVKYIDTGMVRFVGLHESVLALQGVVERNKLRAESNEYDEPED
DEDEDEVEDDDDFEDDEIDNYSDDYGDDDGYDDEDDDEDDDDDDDDQEEEDDDNDDESGS
SDGESEEHTRVLTETEKIKLAEDKKFADELEEEYKKIVLDSYVSNQSIASSSRGKFSVPI
PTRVANEQPSENKGKVGFSLLTKSGKKTNVKQLNLPTDTKFAETILREKANQQEHKERIM
NLVMNMET
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggagaagtctgagcttgatattcgtagacgccaattggctctggtgaacagagaggcc
tggctgggagaatatgtcttttccacagctaacaagcttgattcctcactcaagaaaaac
acagctttcatcaagaaggtccgcacaggcattaattctgatcagtacaagtcgatactc
aaggatatcgagacagtttcgcttgaaaagtacatttcagaaatcatcacatctttgtcc
gaagctttgttcaaggtgctgagatctgatgacatattggccgctatggaagtcgtgctg
gctctccaccaacggttccctacacaattggctccgtacttactcataaacctccttgtg
ggagtagccaatccaattcgtgcccaccaactggacagagaaaaagaggaaattgcacgc
atctcacggcagaagaacgtactcagactaattggagagttctacataattggtatattt
cgtaaacttaacgattgtactaaagatatggtgccagatgatatattgcgtaaattttcc
aagtcagctgctgagcctattgtgacgccggtgttgaaagatgtgttgaactttgagata
aatctcggaaactcgcttggagtcttacaggctttcttaaagcgatttcaacacataata
tatgatgagaataacgatttgcttagttctgaagttaaaaacgtttggagacaaattttc
accatctacacgaaggctgttttcagcatccaggttgacctcaatcgccaggctataagc
gttgctagcagaaacaagaaggcggctatcagaactggtaaaatcctcgatgaacacact
tcagaattgaacgaagtatctgaattgttggaaaaattcaaatctgcagcagaatttttg
ggaggtgtagtaggaatgacacctccgaaattatttactgagaacagcagccaggtatcc
gaatcttccactgtagaagtcgtaaaacaaaagtctctaaacgaagatgaattgggagga
atatgggacgatatccgagaaaagaatttctatacaaagatacctactttagaagaacta
caagaacaatacccacctacagaaatcaacacaaccaaggatggtgaaaaaatagagtac
tttctatccaaactagagaatgtaccccaatccaacgttgaccaactagttgtagatttc
aatgacctccatttgaacaacaaggctaccagaaatagaatcttgaaatttctcatagag
acaccagagattagcaacttgaagtactactgcagattcctaaaagtcaacgagtcgaat
ttgtctgatttaatccacgaattgatcgaattcctcgataaaggctttagatcacaaata
tatcataacaaattgaattttaagaatatttacttctttgtggaattgatcaaattcaag
atgattcccacccacattatatttcataagattagaactttgactttgaacattacttca
tcaaataacatcgacatcttgtctgttttctacgaacatgctgggagatttttgttgaat
gaaactgagtatcgtgagttgatgttgagcatgatttcgctattgaaggaaaagaagaaa
gcgcaaaatcttactatcgatgagaaaatggctattcgtaatttgcttgttgtcatagat
ccgccaataaccaaagtaaacaatttgcaacaaccaaaattcactgtcgttcaacagtat
ataagaagactcatacaagtcgagttgacaaataagacagcctcacaagtttctgtcgaa
cttagaagggtagactatcgagctgataaggacaattattttgttttgatcgattgcttg
tctagtcctgaggatttgaattatgacaatattccgtcacttgcggaaattttggaaaag
atgtccaagaaaaataagcacgtattggccagaactgtcgataccattatagaaaaaatc
attcgtggactcgaagaaaacgactacagattaaacagagttagaatggcccatatcaag
tacatttcggatattttcaactacaagctcgttaacttcaagttcataagagatttgcta
tacaagattgttacttacggacatccaaataagcagccacttccaggaaatagaagtata
tctattgatttgccagacaactattttagagtccagctatgctgtcttttattgatgtct
ataggatctgtggtagaagtcggaaggcggaggaagaaaattcagaagaattccgagcaa
gaagatgtaaacatttcagccttgcgagactttttgatttttttgcagtattacacctac
tgcaaggaacagccaatccctatggaattggaattcagaatcaatgatgttctagtgaaa
tatattgatacgggcatggtaaggtttgttggcttgcatgagtctgtattggccttgcag
ggtgttgtggaacgaaacaagttgagagcagagctgaacgaatatgacgaacctgaagat
gacgaagacgaagacgaagttgaagatgatgatgattttgaagacgatgaaatcgataac
tattcagatgattatggtgatgatgatggctatgatgatgaggatgatgatgaagatgat
gatgatgatgacgatgaccaagaggaagaagatgacgataatgatgatgaatctggatca
agtgatggagaaagtgaagaacatacacgcgttcttacggaaactgaaaaaatcaagcta
gcagaggacaagaagttcgcagatgagttggaagaagaatataagaaaatcgtcctagat
tcgtacgtgtccaatcaaagtattgcatcatcatcaagaggtaaattcagcgttcccatc
ccaactagagtggccaacgaacaaccatccgaaaataaaggcaaggttggcttcagtctc
ttaacaaagagcggaaagaaaactaacgtgaaacagcttaatctaccaaccgatacaaaa
tttgccgaaactattctaagagagaaggcaaaccaacaggagcataaggagagaattatg
aatttagttatgaatatggaaacttag
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