Scheffersomyces stipitis: PICST_82373
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Entry
PICST_82373 CDS
T01023
Symbol
SSD1
Name
(RefSeq) Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3
KO
K18748
protein SSD1
Organism
pic
Scheffersomyces stipitis
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_82373 (SSD1)
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
PICST_82373 (SSD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Dis3l2_C_term
OB_Dis3
CSD2
Rrp44_CSD1
Motif
Other DBs
NCBI-GeneID:
4837316
NCBI-ProteinID:
XP_001382403
JGI:
82373
UniProt:
A3LNR8
LinkDB
All DBs
Position
2:867439..871959
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AA seq
1251 aa
AA seq
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MSSDNLNIPGSGTKKPKNLHIAHRRSPSELTTLMVEQYNLQRQLEQVQAQQKQILQQQQL
AQQQYAYPPPQQQIQQQSQQSQSSELMPPPGYRSHSRSSSTNAHRRTGSSSNNAAQGHNR
RHSLGLNEAIKAAANQRQTNRTSLSPSTTTPSSSGGNDDIVSFKFPPPPSSDDSESPSSS
HSRSRSLAYGQQSFKFPASNSSDNLLPPTPNFSIGQSPERGHQRRGSHYRSGSRNFDANG
INSNWRAQQGASSAGNSSNTSSLEPPQASFVPGHKPRNSSYGGSVSSLSHFLPGSGGGNH
GNTANNGRKSLFAPYLPQSSLPELISDGRLVTGTLRVNKKNRSDAYVSTDGLLDADIFIC
GSKDRNRALEGDLVAVELLVVDEVWDSKKEKEEKKRRKDNTLNSRPLNDDIHNDATSAPS
NESGSTPGTSLEDENDSNEGSGLARRGSLKQRPTMKKNDDVEVEGQSLLLVEEEEINDDV
KPLYAGHVVAVVDRIPGQLFAGTLGLLRPAQAAQAALDKKSGKESSVQTPKSPKIVWFKP
TDKKVPLIAIPTEQAPRDFVENHEKYANRLFVASIKRWPITSLHPFGTLVSRLGKIEDPN
TEIDSILRDNNFLCDEYPDDYSDPSSNVYDLPSTEAELSNPDRIEYLNDYIIAFTQNGTF
VDHALHVKRLSNTRIELGFHVVDVSYYIKPGSTLDRKSKKRSSSVFLPQKIAHLFPEQVN
EVLSFKENERNLALSVVFEIDTANFEVEDLYIHESIVVPKQLVSYDAFDSILEGTPIDSI
SSATCDYIKTFSLIAKEFRRQRLDNRELGITPNLTLLDQLDDEKVRLNLNIFKDSLAYDI
IFEISHKVNNAIAAKVHAGLGEQALLRRHPLPTLQKMETFVRKATNLGFKIDTTTSSTLQ
KSILSIEDPVKRKCIETLLYKCMSRGKYYVAGKQDPDSYGHYYYNLPLYTHFTAPLRRYA
DLIVHRQLKAVLNKVEEEKDLDSLKATADYCNFKKDCAANAQAQAIHLLLSQTINEVSEN
AGQLLCMGTVLQVYESSFDVFIPELGVEKRVHGDQLPLVKAEFDKATRTLELTWEKGVDS
ATYIPADEQSSLSYRNSIKNKYRTSALQAAKLQNKTLLEKNNVTTDSIIEKLARLNLEPP
SLSIPALKSSSGTSENEPTQGKESTRSMPSSPTQSEFPKNTRTNSSSLLQNDASADSFNG
LAPYLQDTITRPGNVQVIKELNQVPVLIRAEIGMALPCLTVRVLNPFAEEQ
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atgagctcagacaatctcaacattcctggttctggaactaagaaacccaagaacctccac
atcgcccaccggcggctgccttcggaattgacaacgttgatggtggaacagtacaatctc
cagcgacaattggaacaagtccaggcacaacagaagcagattctccagcagcaacaattg
gctcaacagcaatacgcttatccaccaccacaacagcagattcaacagcaatcccaacag
tcacaatcttcagaactcatgccacctcctggttatcgttctcacctgagatcatcgtcc
actaatgcacacagaagaactggctcttcgtccaacaacgcagcgcagggccacaacaga
agacattcgcttggtttgaacgaagccatcaaagcagctgcaaaccagaggcagaccaac
agaacttctttgagcccatcgacaactacaccttcgtcttctggtggaaacgatgacatt
gtttctttcaaatttccaccacctccgtccagcgatgattctgaatcgccttcgtcgtct
cattctcgttccaggtctctagcttatggccaacaatcgtttaagttccctgcatctaac
tcttcggacaacttgttgcctcccactcctaacttctcgatcggccagagtcccgaacga
ggccatcagagacgaggatctcactacagaagtggatcccgcaactttgatgccaatggt
atcaactcaaactggagagctcagcaaggagccagttcagctggcaacagtagtaacact
tctctgctagaaccacctcaggcgtcatttgttcctggtcacaagcctcgtaacagctcg
tatggaggttctgtttcttctttgtcgcacttcttgcctggatctggtggtggaaatcac
ggaaacactgctaacaatggccgcaagtctcttttcgctccttatttaccccagtcgtct
ttgccagagttgattagcgatggtcgtttggttacaggtacgttaagagttaacaaaaag
aacagatcagacgcctatgtctcaacggatggtttattggatgctgatatctttatttgt
ggctcaaaagatcgtaacagagccttggaaggcgacttagtagctgtagagttgctagtg
gtcgacgaggtttgggattccaagaaagagaaagaagagaaaaagagaagaaaagacaac
acgttgaattccagaccattgaatgacgatatccacaatgatgctacttctgcaccttcg
aacgagagtggaagtaccccaggtacatccttagaagatgaaaacgacagcaatgagggg
tctggtttggctagaagaggctcgttgaaacaaagacccaccatgaagaagaatgacgac
gtagaggtagagggccagtcgttattattggtggaagaagaagagatcaatgacgatgtc
aagccgttgtatgctggccatgtagttgcagttgtagaccgtattcctgggcaattattt
gctggtacattgggcttattgcgaccagcgcaagccgcccaggctgcattggataagaaa
agcggtaaagaatcttcggtacagacccccaagtctcccaagattgtttggttcaagcct
acggacaagaaagtgcccttgatcgccattcctacggaacaagcacccagagattttgta
gagaatcacgaaaagtatgccaacaggttgtttgtggcctcaattaagagatggcctatt
acatcgttgcatcctttcggtactttagttagtaggttgggcaagattgaagaccccaac
actgagattgattccatcttgagggataataactttttatgtgacgagtatcccgatgat
tattcagatccttcgtccaacgtctatgacttacccagcaccgaagctgaattgtccaat
cccgatagaatcgagtacttaaacgattacattattgcatttactcagaatggtacgttt
gtggaccatgctttgcatgtcaaacgactttctaataccagaattgagttaggtttccat
gtggttgatgtatcttactacatcaagcccggttcgactttggaccggaaatccaagaaa
agatcgtcttctgtgtttttgcctcagaagatcgcacacttgttccctgagcaggtaaac
gaagtgctctccttcaaagaaaatgagcgtaatttggctctttctgtagtttttgagatc
gacactgccaactttgaagttgaggacttgtacattcatgagtctatcgttgttcccaag
cagttggtgagctacgatgccttcgactcgattttagaaggtaccccaatcgacagtatc
tcttcggctacctgcgattatataaagactttcagtttgatagctaaagagttccgtcgg
cagaggttggataaccgtgagttaggcataactccaaacttgacattgttggaccaattg
gatgatgagaaggtacgtttgaacttgaatattttcaaggacagtttagcctacgacatc
atctttgaaatttcacacaaggtcaataatgctatagctgccaaggtgcatgctggtttg
ggtgaacaggcgcttttgcgtcgtcatcctttgcctacgttgcagaagatggagacgttt
gtgagaaaggccacaaatttgggcttcaagattgacaccaccacttcgtcgaccttgcaa
aagtcgatcttgctgattgaagaccccgtcaaacgcaagtgcatagagacgttgttgtac
aagtgtatgtccagaggtaaatactatgttgctggaaagcaggatcccgattcctatggt
cattactactacaatcttcctctttacactcacttcacggctcctttgagaagatatgct
gacttgatagtccatagacaattaaaggccgtgttgaataaggttgaagaggaaaaggat
ttggattctttgaaggctactgctgattactgtaacttcaagaaggactgtgctgccaac
gcacaagcccaggcaatccatttgttgttatcacagacaattaacgaagtcagcgagaat
gctggtcagttattgtgtatgggaacagtactccaggtttatgaatcatcttttgatgtg
tttatacctgagttgggagttgaaaagagagtccacggcgatcaacttcctttggtgaag
gccgagtttgacaaggctacacgcactttggagttgacctgggagaaaggcgtagattct
gccacatacattcctgcggatgagcaatcgtcgttgtcgtacagaaactcaatcaagaac
aagtacagaacttcagcattacaagcagccaagttacagaataagactcttttggaaaag
aacaatgtgacaactgactccatcatcgagaagttggccagattgaacttggaacctccc
tctttgtctattccagcattgaagagtagtagtggaaccagcgaaaacgaaccaacacaa
ggtaaggaatctacaagatcgatgccttcttcgcctacacagtctgagttccccaagaac
accaggacaaactcatcttctctcctccagaacgatgcttcggccgactccttcaacgga
ttggctccatacttacaagacaccatcacgagaccgggcaatgttcaagtcattaaggag
ttgaaccaggtcccagtgttgatccgggccgagatcggcatggcactcccatgtttgacg
gttcgtgtcttgaatccatttgcagaggaacaatag
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