Scheffersomyces stipitis: PICST_83216
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Entry
PICST_83216 CDS
T01023
Symbol
RRP5
Name
(RefSeq) Part of small ribosomal subunit (SSU) processosome (contains U3 snoRNA)
KO
K14792
rRNA biogenesis protein RRP5
Organism
pic
Scheffersomyces stipitis
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pic03009
]
PICST_83216 (RRP5)
Ribosome biogenesis [BR:
pic03009
]
Eukaryotic type
90S particles
Other 90S particles
PICST_83216 (RRP5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1
S1_RRP5
OB_RRP5_4th
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
Spt6_S1
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
Suf
OB_RRP5
BUD22
Nop14
TPR_19
TPR_CcmH_CycH
Motif
Other DBs
NCBI-GeneID:
4838895
NCBI-ProteinID:
XP_001384440
JGI:
83216
UniProt:
A3LTH8
LinkDB
All DBs
Position
4:complement(739164..744437)
Genome browser
AA seq
1699 aa
AA seq
DB search
MSETYGSKSVLSSSEVSFPRGGATALTPLEVKEISNEATKDVLFEAANSAKRTASSKTDR
PAKKARRAPKKKSQEDADEAEEDSKVQIENITFKSLIPGTLVLGQITAVGKLDITLALGD
NLVGYIPITSISEELTIQIEQYEKAEDSDEESEDEEDEQESEDGKIRTATLKSKSRPEFP
ELKTLFSIGQWLRAKVVQPSSSQNQNQKQKKRIQLTIEPETVNQPLEDEDLIPGNALQCS
VKSVEDHGIIMNTGRDGLSGFISNKEIKNTPDLDVEILKPGKVLLTSIVSKSASRTVNLR
PIHSTSVSKKSAVTSISSVDAVLPGILVDALVADVTKNGLIVKVFGLVDATINLAQLQEF
DFNALKHKYAIGNNIKARVMAVLTRAGSKKLILSHLPHAISYTSTASNPDALEAFPIGHV
LEDAEVVGSDPNYVFLKFGGSILGQVHNSKIDKDKTLEHDFNLGSKHSARVIGFNSIDNL
LVLTMESHVINSQYLHASDVPNGTAVKSCEIIKVLPEAGGIVIKVLDEFEGFVPGSHMSD
IKLVYPERKFKVGSKVRGRVLSKQGNKLVVTFKKSLVNIEDDEVLARFEDAKIGFKTPAI
VEKFVHNGAIVSFFGNLRAFLPKNEISETFVSNASDYLRLGQTVNVRVLDVKQEEKRMLV
TLRHSSELTNTQKSSIDDLQPGKSIVTVSVVEKTKDSVIVELEGNSLRGVIYTGHLTDGN
YEQNRAYAKKLSIGEKLEVLVLEKDLKARTVIVSAKKSLIDAAKQDAIPAYFKDIKVDNK
MLRGFVKSVTNKGLFVSFAGKLTGLVLAKYATSNENEDLLKKFYKYQSIACRVINIDEEN
KRFLLTLKDVNGSKNIDSEAVVNPVDTSKKLIGDFVPGIATKAVIKSVKGTQLNVQLADN
LQGRIAATECFNSWNEIKDKKQPLSQFHKGQVIDVKIIGFHDAKNHKFLPITHTRSNKNI
ILELSLIKKDLESSTPYQELTFSSIVPGSQHIVFVNNIAKGYVWASLSPNIRGRISFMEL
TDNVSVFDDLENNLPIGSAISATVKEVDNEHHSVVLTARKNMVASIKDVKVGQKYPARIL
KVRDTYVLVELGEKVVASAFITDALDNYSDKLESVFTTNEFATATVLDIDTDSEKIAVSL
RTDSPTDKVINSIADLNRGDVVKGFVKNVANNGVYVSLGRSVHALVRVADLSDAYLKDWK
KYFKPHQPILGKISACKEEGRVLMTLKESEVSGELNVLKRFDDLVVGEIFEGSVKRATDF
GVFIKLDGTLNITGLCHHSQIADKDVDNVTSLFGEGDRVKVKLLAIDSDKKQLSLGMKAS
YFTTGEETEGETDDIEMKESDDESEVEESEEEEAENDEDDDDDEEDEEEDVEEKSTGSLS
GLATNGFDWTASILDQAEDDDESSDEEDFTQDKKSKKKKQNIVEDKTADLNTRAPQSVAD
FERLLVGNPNSSILWMNYMSFQLQLSEADKAREIGERALKTINYRDEQEKLNIWIALLNL
ENTFGTDESLEEIFKRSTQYMDSLTMHQKLVSIYSMSEKYYQAEELYKVMTKKFGKSISV
WVQYGSFLLDRKLQEETHEVLAKALQTLPKRDHIEVVRKFAQLEFSKGDAEQGRSLFEGL
VADAPKRIDLWNVYVDQEIKQDNKSKVEDIFERALAKKLSRKQAKFFFTKWLAFEEEKGD
EQMAARIKARAVEYAQSHK
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atgctggaaacttacgggtccaagtcggtgctcagcagcagcgaagtctccttcccaaga
ggtggagccactgccttgactccacttgaagtgaaggaaatctccaatgaagccacgaaa
gatgttctttttgaagccgctaattctgcaaagagaactgcttccagcaagacagacaga
ccagccaagaaggcaagaagagctcctaagaaaaagagccaagaagatgcagacgaagca
gaagaagactcaaaagtccagatcgagaatatcacctttaagagtttgattccaggcact
ctcgtattgggtcagattactgctgtaggaaaattggatatcactttggctcttggcgat
aacctcgttggttacatccccattacgtccataagcgaagagttgaccatccaaattgaa
cagtacgaaaaggccgaagattcagatgaagaatcagaagacgaagaagatgaacaagaa
tcggaagacggcaagataagaaccgcaacattaaagagcaagtcacgcccagaattcccc
gagctcaagacgttattctccattggccaatggttgagggccaaggtagtccagccatct
tcctcccagaaccagaaccagaaacaaaagaagagaatacagcttactatcgaaccagaa
acagtcaaccagcctcttgaagacgaagacttgattcctggaaatgccttacaatgttct
gtcaagtctgtggaagatcacgggattatcatgaataccggcagagacggcttgtcaggt
ttcatctccaacaaggaaatcaagaacaccccagacttggacgttgaaatattgaaacct
ggaaaagtcttgcttactagtattgtatccaagtcagcttctagaaccgtcaatttgaga
ccgattcactcgacttcagtatcgaaaaagtcggctgtaacatccatttcttctgtagat
gccgttttaccaggtattttagtggatgcacttgtagctgatgtcacaaagaatggtttg
atagtcaaggtatttggattggtagatgctaccattaacttggcccaactacaggaattt
gacttcaatgctttgaaacacaagtatgccattggtaacaacataaaggctagagtcatg
gctgttctcacccgagccggatctaagaagttgatcttatcgcatttaccccacgccatt
tcctacaccagtactgccagcaacccagatgctttagaagctttcccaattggtcatgtg
ttggaagatgctgaagttgtgggctctgatccaaattatgtcttcctcaagtttggaggt
tctattcttggtcaagtgcacaactccaagattgacaaggataagacacttgagcacgac
tttaatcttggctcaaagcacagtgccagagtgattggcttcaatagcatagacaactta
ttggtgttgactatggaatcccatgtcataaactctcaatacttacatgcttctgatgtt
cctaacggaaccgccgtcaaatcatgtgagatcatcaaagttttacctgaagctggtgga
attgtcattaaagttctcgacgagttcgaaggatttgtaccaggcagccacatgtctgac
atcaaattggtataccctgaaagaaagttcaaggtaggcagtaaggtcagaggcagagtg
ttgagcaaacaaggtaacaagttagtagtgacatttaagaagtcgttagttaacattgaa
gacgatgaagttttggccagattcgaagatgcaaaaattggcttcaagaccccagccatt
gttgaaaaatttgttcacaatggtgccattgtgtctttctttggtaacttgagagctttc
ttgcccaaaaacgaaatctcagagacatttgtaagcaacgctagtgattacttgaggttg
ggacaaactgtcaacgtcagagtgttagacgtcaaacaggaagaaaagagaatgctagtc
accttgaggcattcgtcggaattgaccaacacccaaaaatcatccattgatgacttgcaa
ccagggaaatctattgtaaccgtatctgttgtagaaaagaccaaggactcggttattgtt
gagttggaaggcaacagcttgcgtggtgtcatatatacgggccatttgactgatggcaac
tacgaacaaaacagagcctacgctaagaaattatccattggcgaaaagcttgaagttctt
gtgctcgaaaaggatttaaaggctagaacggttattgtttcagccaagaaatccttgatc
gacgctgctaagcaagacgccatcccagcttacttcaaggatatcaaggtggacaacaag
atgttgcgtggtttcgtcaagtctgtcaccaacaaggggttgttcgtatcctttgctggt
aagttgactggtttggtgttggctaaatatgcaaccagcaacgaaaacgaggacttattg
aagaagttctacaagtaccaatcgattgcttgtcgtgttatcaacattgatgaggaaaac
aaaagattcttgttgactttgaaggatgtcaacggctccaagaacatcgactctgaggcc
gtagtgaacccagtagacactagcaagaagttgattggtgactttgttcctggtatcgct
acgaaggctgtcatcaagtcggtcaaaggtactcaattgaacgttcagttagctgataac
ttacagggcagaattgcagctactgagtgtttcaactcctggaatgaaatcaaggataag
aagcagccattgtctcagttccacaagggtcaagttattgatgttaagattatcggtttc
cacgatgctaagaaccacaaattcttacccataacccataccagatctaataagaacatc
atccttgagctttctctcatcaagaaggatctcgaatcttccactccataccaggagttg
accttttctagcatcgtccccggttcccagcacattgtatttgtcaacaacattgccaag
ggctatgtctgggcatcattatctccaaacatcagaggacgtatttctttcatggaattg
acagacaatgtttcagtgttcgatgatcttgaaaacaacttgcctattggttctgccatc
agtgcaactgttaaggaagttgacaatgagcaccactcggttgtgttgacagccagaaag
aacatggtggcttctatcaaggatgtcaaagttggtcaaaagtaccctgccagaattttg
aaagtcagagacacctatgttcttgtcgaattgggcgagaaggttgtagcctctgcattc
attactgatgcattggacaactattctgacaaattggaatctgtctttaccacgaacgag
tttgctactgctaccgtcttagacatcgacaccgattcagagaagatagctgtctcctta
cgtaccgacagccctactgacaaggtgatcaactccattgctgacttgaaccgtggcgat
gtcgtcaagggatttgtcaagaatgtagccaacaacggtgtatatgtttcattgggcaga
tctgttcatgctttggtcagagttgctgacttgtctgacgcctacttgaaggactggaag
aagtacttcaagccacatcagcctattttgggtaagatctcagcctgtaaagaagaaggc
agagtattgatgactttgaaggaaagtgaggtcagcggtgagttaaacgtcttgaagaga
ttcgacgatttggtcgttggtgaaatctttgagggttctgtcaagcgtgctactgatttt
ggtgtatttatcaagttggatggtactctcaacatcactggtttgtgccaccactctcaa
attgctgacaaggatgtagataatgttacttccttgtttggtgaaggtgacagagtcaag
gtcaaactcttagctattgacagcgacaagaagcagttgtcgttgggtatgaaagcttca
tactttactactggtgaagaaactgaaggagaaaccgacgacatagaaatgaaggaaagc
gatgacgagtctgaagttgaagaatccgaagaggaagaagccgaaaacgacgaagatgac
gacgacgacgaagaagacgaagaagaagacgtcgaagaaaaatcgactggttctttatct
gggttggccactaatggatttgattggactgcttccatcttagaccaagctgaagatgat
gacgagtcttctgacgaagaggatttcacccaggacaagaagtccaaaaagaaaaagcag
aatatcgttgaagacaagactgctgacttgaacacgcgtgctccacagtccgtggccgat
ttcgagcgtcttcttgtaggaaatccaaactcttctattttgtggatgaactacatgtct
ttccaattacaattgagtgaagccgacaaggctcgcgagatcggggaaagagccttgaag
accataaactaccgtgacgagcaagagaaattaaacatttggattgccttgctcaacttg
gaaaacactttcggtactgatgaatccttggaagagattttcaagcgttcgacccagtac
atggactcattgaccatgcaccagaagttggtcagtatctacagcatgtcggagaaatac
taccaggctgaagagttgtataaggtgatgactaagaagtttggcaagtctatatccgta
tgggttcaatatggttccttcttgttggaccgtaagttacaggaagaaacacatgaggta
ttggccaaggcattgcagactttacccaagagagatcatattgaagttgtgagaaagttc
gcacaactcgagttcagcaaaggggatgctgaacagggtagatccttgtttgaaggtttg
gttgccgatgctcctaagagaatcgacttgtggaacgtttacgtggaccaagaaatcaaa
caagacaacaagagcaaggttgaagacatctttgagagagctttggctaagaagttgtca
agaaaacaggccaagttcttcttcaccaaatggcttgcttttgaagaagaaaagggagat
gaacagatggctgctagaatcaaagccagagccgttgagtacgcccaatctcacaagtag
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integrated database retrieval system
