Scheffersomyces stipitis: PICST_83466
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Entry
PICST_83466 CDS
T01023
Symbol
MSU1
Name
(RefSeq) 3'-5' RNA exonuclease complex component
KO
K19782
exoribonuclease II, mitochondrial [EC:
3.1.13.1
]
Organism
pic
Scheffersomyces stipitis
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
pic03029
]
PICST_83466 (MSU1)
Enzymes [BR:
pic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PICST_83466 (MSU1)
Mitochondrial biogenesis [BR:
pic03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Other mitochondrial DNA transcription and translation factors
PICST_83466 (MSU1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-GeneID:
4838713
NCBI-ProteinID:
XP_001384206
JGI:
83466
UniProt:
A3LU45
LinkDB
All DBs
Position
4:1319731..1323325
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AA seq
1146 aa
AA seq
DB search
MPKRDKSVQNKTRNGVPKQKKGYQSDLKPSFLSAYGRQNVVEHRKDYQLPSNLMAARKLV
VPDSLKNQYKPFDFSKKSSEPLKQAQKKSHINKQKKEVDESRSKIKDIVKNSNRMDSEFF
NPSNQTLDLRLNNSILYEQITGNQKDRMEKRYGESSKRWLNSFYKLLNQTSKVETYAEIK
KSISKAIQESSISTANVHHALSVGDLVVFSEESITFAIVVGAPKNLESDTYTFVDSRGEV
TFGPAKSFAYRFPGVIPSEYHDIISSFVQLEKKYLDIAPVGLTDMDFSKSTASLPQELQT
DFPEDDKPRSLNDGINFSENTDFVVAQATSQLLTNSNVNTYIIPTPARDLYCDSLTALAV
EVFDEVSRMKKPLENLHRLLQFDRNGDPLSTPRSISLFELLHYLEELESSSFEVNNDDIS
SLGQFIDPESSYTDKAFPVSKYLALLSSLRIQSRSWNVIFASKSLLPVSVTILPANRTSI
IHRVLAHIKDGGDLEFSQYCLKKAKGEPTPLPTFYHTLVQLFKDYTIGNFTNDLALEAAL
VSIIRMVDEKQYSSENRPDNTYSYEYSRARAYDLLKDIGAIDSDNSSRVDPVHWSNALNL
PGQNVSASTDISEDYMDFLNESLTPVALLPLTMKEDFIPEDSLESIRKEFGETPIYCIDD
ADAHEVDDGISIHTSNDKYVLSVHVANPTSYIKPGSILNAIAFNRATTSYINEGAYFMFP
KLISKLSGLGVDGQRTRTYAVQYSLDKKLIDSFVEKKLKDPDYEPPQEFCEQVLKQIDES
IDVNFLIASRFPVGYTYNKVNEILGNMELIQSFKENRCNDEHFVNLYKLHNISKILKSIR
HTLGGSFDYHSERMNVKIREELEPIKEESVIEVDADSFKLIPKNSTKSVEISKSSITSPS
VSLVTEFMLFANSSSAKFADKNKIDFIYRSQNRKFNLQLIKEMEDKIVSKLRSGKSVSFE
AQQILRVFSRSASLSTVAEFHDGVGIDKYGWVTSPLRRYVDVINHWNIASFLLQKAGRES
SQYADEKQLRSAILHIQSKSLVDKRMQTVSNKFWLSTFLKEYTKMVNDKSCKITPIIFKL
LVVGRRSGYINVEMVGFGARGQLEVSPKLLEDYSLEEIEVGDTLESDRFRVSRIDFIEDT
LELVYV
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaaagagacaaatccgttcagaataaaactagaaatggtgtaccaaagcagaag
aagggataccaaagcgacctaaagccgctgtttctctcagcttatggcaggcaaaatgtc
gtcgaacaccgcaaagactatcagttaccgagcaacttgatggcagcccgtaaattggtg
gtcccagactcactcaagaaccagtataaaccgtttgattttagcaagaagagcagtgag
ccactaaaacaggctcaaaagaaatctcatattaacaagcagaagaaggaagtagacgaa
agtagactgaagataaaagatattgtgaaaaactcaaacagaatggactctgaattcttc
aacccatcgaaccagactttggatctcagattgaacaatagcatattgtatgaacaaata
accggaaatcagaaagatagaatggagaagagatacggtgagtcgtccaagagatggctc
aacagcttctacaaactcttaaaccagacttccaaggtcgaaacctatgccgaaatcaag
aagtctatttccaaagctattcaagaatcgtctatttccacagctaatgtccaccatgct
ctttctgtaggtgatttagtagtgttttcggaagaaagcattactttcgccattgtagtt
ggtgcacccaagaacttggagtcggatacgtatacatttgtggatagtagaggagaggtt
acgtttggtccagccaagtcttttgcgtaccgatttccaggtgtgataccttctgaatac
cacgacatcatatctagcttcgtccagttggaaaaaaagtatttagatatcgctcctgta
ggtcttacggatatggacttctccaagtcgacggcatcgttgcctcaagaattgcaaaca
gattttccagaagacgacaagccacgttcgttgaacgatgggataaatttcagtgagaac
acggactttgttgttgcacaggccacatcgcaattgttgacaaattcgaatgttaacacc
tatataattcctacgccagccagagatttgtattgcgactctttgactgctttggctgta
gaggtatttgatgaggtatcgagaatgaaaaaacctttggaaaaccttcacaggctctta
caattcgacagaaatggcgatcctcttagtacgcctcgttctatctccctctttgagttg
ttacactacttggaagaattggaaagctccagctttgaggtaaacaatgatgatatttca
tcattgggacaattcatcgatccagagagctcttatacagacaaggcgttcccagtttcg
aagtacttggctcttttgtcatctcttagaattcaatcgagaagctggaatgtcatattt
gccagcaaatctcttttgcctgttagtgtaaccatacttccagccaacagaactctgatc
atccacagagtgttggctcacattaaagatggaggtgatttggaattcagccaatattgt
cttaagaaggcaaagggtgaaccaactcctttaccgacattttaccacacccttgttcaa
cttttcaaagattacacgattggaaacttcactaatgatttagcacttgaagcagctttg
gtttccattattagaatggttgatgagaaacagtattcgtctgagaatcgtcctgataat
acctactcctatgagtattcaagggcaagagcctacgacctcttaaaggatattggggcc
atagactctgacaattcttccagggtcgacccagtgcattggtcaaatgctctcaactta
ccaggacagaacgttagtgcatcgactgacatcagtgaagattatatggatttcttgaat
gaaagcttgacaccagtggctttacttcctttgactatgaaagaagatttcattcctgaa
gattcactagagtcgataagaaaggaatttggagaaacgcctatttactgtattgacgat
gccgatgcccatgaagtggatgatggtatctcaattcataccctgaatgacaagtatgta
ctttcagtacatgtagccaatcctacttcttacatcaagccagggtctattctcaatgca
attgcctttaacagagctacgaccagctatataaacgagggtgcgtacttcatgttcccc
aagcttatttcgaaattgtcaggtcttggtgttgatggacaaagaacaagaacttatgct
gttcaatattcgttggacaagaaattaattgatctgttcgttgagaagaagcttaaagac
ccagactacgagccgcctcaagagttctgcgaacaggtcttgaagcagatagatgaaagt
attgatgtgaacttcttgatagcttcaagatttccagttgggtacacctacaataaagta
aatgaaattcttggtaatatggaactaatccaactgttcaaggaaaatagatgcaatgat
gaacattttgtcaatttgtataaattgcataatatatccaagatactcaagtccattaga
cacacgcttggtggctcgtttgattaccattctgagagaatgaatgtcaaaatcagagaa
gaattggagcctataaaggaggagtctgttattgaagttgatgccgattccttcaaacta
attcctaagaattctaccaaaagtgtagagatatctaaaagttcgataactagtccttct
gtgtctttggttactgaatttatgctcttcgcaaattcgtcttcagcgaagtttgcagac
aagaacaaaattgacttcatctatagatcacagaatagaaagtttaatcttcagttgatc
aaagagatggaagataagatcgtgtcgaagctacgctctggaaaactggtgtcgttcgag
gcacaacagatactccgagtatttagtagaagtgcatctttatctacagtagcagaattc
cacgacggagtaggtatagataagtacggatgggttacttcgccattaagaaggtatgtc
gatgttatcaaccattggaatatcgcatcttttctattacagaaagcgggcagagaatcc
agtcagtatgccgatgagaaacaattgcgcagcgccattttgcatatccagagcaagagc
ttagttgataagagaatgcagacggtgtctaataaattctggctaagtactttcttgaaa
gagtacacaaaaatggtgaatgataagagttgcaaaattacaccaattatatttaagttg
ttagtggtgggtagaagaagtggttacattaacgtggagatggttggatttggtgccagg
ggccaattagaggtgtccccgaaactcctagaggattactccttggaggaaatagaggtt
ggcgatactttagaatcagaccggttcagagtgtctcgtatagactttattgaagacaca
ctcgagctagtgtacgtctga
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