Scheffersomyces stipitis: PICST_83587
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Entry
PICST_83587 CDS
T01023
Symbol
SUB2
Name
(RefSeq) Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pic
Scheffersomyces stipitis
Pathway
pic03013
Nucleocytoplasmic transport
pic03015
mRNA surveillance pathway
pic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PICST_83587 (SUB2)
09122 Translation
03013 Nucleocytoplasmic transport
PICST_83587 (SUB2)
03015 mRNA surveillance pathway
PICST_83587 (SUB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_83587 (SUB2)
03041 Spliceosome [BR:
pic03041
]
PICST_83587 (SUB2)
Enzymes [BR:
pic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PICST_83587 (SUB2)
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PICST_83587 (SUB2)
Spliceosome [BR:
pic03041
]
Complex C
Other components
EJC/TREX
PICST_83587 (SUB2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PICST_83587 (SUB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
4838602
NCBI-ProteinID:
XP_001384319
JGI:
83587
UniProt:
A3LST5
LinkDB
All DBs
Position
4:complement(102120..104042)
Genome browser
AA seq
433 aa
AA seq
DB search
MSHEGQEELLDYSDSEEIAVPTTTEVAGADSATDKEADKKGSYVGIHATGFRDFLLKPEL
LRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEIST
LVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGTPIKRDIEKLKSKDTCPHIVVATPG
RLHALVNEKAIRLSNVKSFVIDECDKVLESIDMRRDVQDIFRATPHQKQVMMFSATLSQE
IRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLEEKEKNRKLSDLLDSLEFNQVIIFV
KSTQRANELNKLLCSCNFPSIAVHSGLPQEERIERYRSFKEFNKRICVSTDVFGRGIDIE
RINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISLVGSKEDEEVLEKIQSRFDVKITEF
PEEGVDPSTYMNT
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcacgaaggacaagaagaattgttggattactccgactctgaagaaatcgccgtt
ccaaccaccaccgaagtggctggcgcagattctgccactgataaggaagctgacaagaag
ggatcctacgttggaatccatgccaccgggttcagagacttcttgttgaagccagaattg
ttgagagccattggagactgtggttttgaacacccttcagaagtccaacaagtctgtatt
ccacaatccattttgggtactgacgttttgtgccaggctaagtctggtttgggtaagacg
gccgtgttcgtcttgtctaccttacaacagttagacccagttccaggtgaaatttccacc
ttggttatctgtcacaccagagaattggcctaccagatccgtaacgaatacgccagattt
tccaagtatatgccagacgttaagaccgaggtcttttatggtggtactccaatcaagaga
gacatcgaaaagttgaagagcaaggatacatgtcctcacattgtagttgctacaccaggt
agattacatgctttggttaacgaaaaggctatccgtttgtccaacgtcaagtcttttgtt
atcgatgaatgtgacaaggtcttggaatccatcgacatgagaagagacgtccaggacatt
ttccgtgctactcctcaccagaagcaagtgatgatgttctcggctactttgtcgcaggaa
atccgtcccgtctgcaagaagttcatgcaaaaccccttggaaatctacgtcgacgacgaa
gccaagttgactttgcacggcttgcaacagtactacatcaagttggaagagaaagaaaag
aacagaaagttgtctgacttgttggactcattagaattcaaccaggtcatcatttttgtg
aagtctactcagagagccaacgagttgaacaagttgttgtgtagttgtaacttcccatct
attgctgtccactctggtttgcctcaagaagaaagaattgagagatacagatctttcaag
gaattcaacaagcgtatctgtgtttccaccgacgttttcggtagaggtattgatatcgaa
agaatcaacttggccatcaactatgacttgccaaacgaagccgaccagtacttgcacaga
gtaggtagagccggtagatttggtactaagggtttggccatttctttggtgggatccaag
gaagacgaagaggttttggaaaagattcaatccagattcgatgttaaaatcaccgagttc
ccagaagaaggtgttgacccatccacttacatgaacacctaa
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