Scheffersomyces stipitis: PICST_85155
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Entry
PICST_85155 CDS
T01023
Name
(RefSeq) general RNA polymerase II transcription factor, TFIIB subunit
KO
K03124
transcription initiation factor TFIIB
Organism
pic
Scheffersomyces stipitis
Pathway
pic03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PICST_85155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pic03021
]
PICST_85155
Transcription machinery [BR:
pic03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
PICST_85155
Prokaryotic type
Archaeal type
TFB
PICST_85155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Zn_ribbon_3
DUF2824
Motif
Other DBs
NCBI-GeneID:
4840742
NCBI-ProteinID:
XP_001386238
JGI:
85155
UniProt:
A3LYP5
LinkDB
All DBs
Position
7:complement(116727..118274)
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AA seq
350 aa
AA seq
DB search
MAPGSAATAVSSNGPEPFLGPNLNVTLTCPECKIFPPDLIERFSEGDIVCGSCGLVLSDR
VVDTRSEWRTFSNDDQNGDDPSRVGDAGNPLLDTEDLSTMISYVPENTRVGRELNRAQSK
SLVDKKDNALAAAYAKISQMCDGYQLPKIVQDGAKEVYKLVYDERPLRGKSQESIMAAAI
FIGCRKAKVARSFKEIWALTNVPRKEIGKVFKIIDKVIQEKNAANPNALMFNQDNMQTTQ
TTAEDLIRRNCSHLGLNAQVTNGAEYIARRCKEVGVLAGRSPTTIAATVIYMAALVFGID
LPPSKISDKTGVSDGTIKTSYKVMYEEKEKLIDPYWIETGRVKMENIPKS
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atggctccaggtagtgctgctactgccgtgctgtcaaatggccccgagccgtttctcggt
cctaatctcaacgtcacgttgacatgtcccgaatgtaagatcttcccccctgatttgata
gagaggtttagtgaaggagatatcgtttgtggcagttgtgggttggtcctcagtgatcgt
gtagtggatactagatccgaatggagaacgttcagcaacgacgaccagaacggagacgac
cccagtcgtgtaggagatgctgggaatccgttgttggacacagaggatttgtcgactatg
atttcatacgtgccagaaaacaccagagttggacgagaattgaatagggctcagtccaaa
tcgcttgtagacaagaaggacaatgcattggcggcagcatatgcaaaaatctcacagatg
tgtgatggttaccagttgcctaagattgtccaggatggtgccaaagaagtgtataagttg
gtgtatgatgaaagaccattgagaggcaaatctcaagagtccatcatggctgctgctatc
tttattggctgccgtaaggctaaagtggctcgttcattcaaggagatctgggccttaacc
aatgtcccccgcaaggaaataggaaaagtattcaagattattgacaaagtgatccaagaa
aagaacgcagctaatccaaatgcattgatgttcaaccaggacaacatgcaaaccacgcag
accacagctgaggacttaatcagaagaaactgttctcatttgggtttgaatgctcaagtc
acgaacggtgctgagtacatagctagaagatgtaaggaagtaggtgttttggctggtaga
tcgcctacaactattgctgctactgttatttatatggcagcattggtatttggcatcgac
ttacccccatccaagatctctgacaagaccggtgtcagtgacggtacaatcaagacttct
tacaaggtgatgtatgaagaaaaggaaaagctcattgatccttattggatcgagaccggc
agggtcaagatggaaaacattccaaagagttag
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