Scheffersomyces stipitis: PICST_85287
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Entry
PICST_85287 CDS
T01023
Name
(RefSeq) predicted protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pic
Scheffersomyces stipitis
Pathway
pic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PICST_85287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_85287
Enzymes [BR:
pic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PICST_85287
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
PICST_85287
mRNA degradation factors
3'-5' decay
Ski complex
PICST_85287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
Ski2_beta-barrel
MTR4_beta-barrel
MTR4-like_stalk
ResIII
Helicase_C
DEXQc_Suv3
TcpS
Motif
Other DBs
NCBI-GeneID:
4840486
NCBI-ProteinID:
XP_001386296
JGI:
85287
UniProt:
A3LZ34
LinkDB
All DBs
Position
7:complement(518699..523579)
Genome browser
AA seq
1239 aa
AA seq
DB search
MSVDSGAEDDALRSILDPHTRTNFREDFGEDFAAQDQELLNSYVAPSDHVTWEIQRSVQT
VPQVDKQKVHRLLLKSPERMRRTSYRLKRNILFGQVTGYKEELRQADIDNAKAENSMSVN
RKYTTKLEALRGRSSYLPFNPGGIIGDLKEVKPIVKTKRSHRDQYGLLDRPPDLSRGLKL
DESQQNQQIESLAESIDSLKMLNEVNDLDDEGTKQSSQEQPSSQVFPVPFVAAEIEGIVV
PDFVAINAASKAKRKQKSWAHVVDLDHTIDNFHELIPNMARTWPFELDTFQKEAVYHLEK
GDSVFVAAHTSAGKTVVAEYAIAMASRNLTRTIYTSPIKALSNQKFRDFKETFKDTDVGL
ITGDVQINPGANCLIMTTEVLRSMLYRGADIIRDVEFVIFDEVHYVNDIDRGVVWEEVII
MLPDHIKYILLSATVPNTFEFANWVGRTKEKDIYVISTPKRPVPLEIFISAKDNMFKVVD
SHRVFSEDEFKKHKEHLENSKKKPGLPKASMGSGTRGGPGGSARGGNRGGRGGQSANRGR
GNLVTRAGGRFFAQDGPNKGTWLNLVQYLKKSNLLPCVAFVFSKKKCEEYADSLTSVDLC
TAREKSEIHMFIDKSLFRLKKEDRELPQILKIREMLSRGIAVHHGGLLPIVKECIEILFA
KTLVKVLFATETFAMGLNLPTRTVVFSSLRKNDGRSFRNLLPGEFTQMSGRAGRRGIDAT
GTVIVMAYNDPLSPVDFKEITLGTPTKLQSQFRLTYNMILNLLRIEALPVEEMIKHSFSE
NSTQVLLPENQKKVDKLLLQSHSLKLTPCEECDLEGIQETYDLMKSYEVLYGQLTALIHE
VSASKLQILKSGRLVFFRDNNKVVRMGAIVKSDNSTDSVSIITFDHGKPFEEDSAMFKLP
FVPIYEYRLMNFKKIIFNGNLRVESVPYESICFICGYAIMANIFQVLQNEEKAVSEFKEQ
INSILEFQNEIEEVSFGLMNKLSLYESLAGKRNIYEQLCKTTSWECSNFKSHYVEIHEKN
KLEVEIASLQSMISDENLELLPDYAQRLQVLETMGFIDEQQNVVLKGRVACEINSGWELV
VTELVLDNFLGDFEPEEIVALLSCFVYEGRTNEEEPPLINGRLERGKTRILELTEKLLDV
YGEHQVSLTSEEEEFLDRKRFALTNVVFEWARGLSFNEVMQISPEAEGTIVRVITRLDEV
CREVRNAALIVGDSTLSQKMSVAQEKIKRDIVFCASLYL
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtcgattctggggctgaagacgatgcacttagatcaattctagacccgcacact
cgaactaatttccgggaggattttggggaggattttgcagctcaggatcaggagttgttg
aatctgtacgtcgctccttctgaccatgtcacttgggaaattcaaagactggtgcagacg
gttcctcaagtcgacaaacagaaagtacacaggctacttctaaaatcaccggaaagaatg
aggcgaacgtcgtatcggttaaagcgaaatatcttgtttggacaagttacgggatataag
gaagaacttagacaagcagatatagacaacgctaaagctgaaaactcgatgtcggtgaat
agaaagtataccacgaagttggaggcgctcagaggtcgtagttcgtatttgccatttaat
cccggtgggatcattggtgatttgaaggaagtaaaacctatagtcaagacgaagcgcctg
caccgagaccagtacggtctcttagatcgtccaccagatttatctcgagggttgaagttg
gatgaaagtcaacaaaatcaacaaatagagtctcttgccgagtcgattgatagcttgaaa
atgttgaacgaagttaatgacttagatgacgaaggaaccaagcaatcatctcaagaacag
ccctcatcacaagtatttccagtaccttttgtagcagctgagattgaaggcattgtagtt
cccgactttgtagcaattaatgctgcttcaaaagctaagaggaaacaaaagtcctgggct
catgtagttgatttggaccacaccattgacaacttccacgaacttatacctaatatggcc
cgaacgtggccgtttgaattggacactttccagaaggaagccgtgtaccacttagaaaaa
ggcgactccgtatttgtagcagcacatacctctgctggtaagacggttgtagctgagtat
gccatagctatggccagccgtaatttgacgaggaccatatatacatcgcctatcaaggca
ctttccaatcagaagttccgagactttaaggaaacgtttaaagatacagacgtaggcttg
attactggagatgtacagatcaacccgggagccaactgtttgatcatgacaacagaagtc
ttacggtcgatgttgtaccgaggtgccgatatcattcgagacgtggagtttgttattttc
gatgaggtccattacgtcaacgatatcgatcgtggtgtggtatgggaagaagtcatcatc
atgttgccagaccacatcaagtatatcctattgtctgctacggttcccaatacgtttgaa
tttgccaattgggttgggcgaaccaaagagaaggatatatatgtcatttcaacgccaaag
agacctgttcccttggagatcttcatttcggccaaagacaatatgttcaaagttgtggat
tctcacagagtatttagtgaagatgagttcaagaaacataaagagcaccttgaaaacagc
aagaaaaagccgggactacctaaagcttctatgggatctggtacacgtggaggtccaggt
gggtctgccagaggtggaaatcgaggaggaagaggtggacaatcagctaatagaggcaga
ggtaaccttgtcacgcgagcagggggcaggttctttgcccaggatggccccaataagggt
acctggctcaatcttgtacaatatctcaagaagtccaatttgttgccttgcgtggctttc
gtattctccaagaagaaatgcgaagaatacgctgatagtttgactagcgttgacttatgt
acagccagagagaaatcggaaatccacatgttcatagacaagtctctatttcgtttgaaa
aaggaagatcgggagttaccgcagattcttaagatcagagaaatgttgagccgaggaatt
gctgtccatcacggaggattacttcctatagtcaaggaatgcattgaaattctttttgcg
aagactttggtcaaggttttgtttgcaacagagacatttgccatgggtttgaacttgcct
actagaacagttgtatttagttcgctccgtaagaacgatggtagaagcttcagaaactta
ttgccaggagaattcactcaaatgtcaggtagagcaggtagaagagggatagatgccacc
ggtacagttatagtcatggcctacaacgatccactctcacctgtagacttcaaggagatt
acattgggtacaccaacgaagttgcaatcgcagttcagattgacatataatatgatcttg
aatctactcagaatagaggccttgccagttgaggaaatgattaaacattcgtttagcgaa
aactcaacccaggttctcctccctgaaaaccagaaaaaagtagataagttgttactccaa
ctgcattcgttgaagttgaccccgtgcgaagagtgtgacctcgaaggaatccaagaaacc
tacgacttgatgaagtcatatgaagtgttgtatggccaattaactgcactcatccatgaa
gtgagtgcgtctaaacttcagatcttgaagtctggtagactagttttcttcagagacaac
aacaaagttgtgagaatgggagcgatcgtcaaatcagacaattctaccgactccgtctca
attatcacgtttgatcacgggaagccatttgaagaagatagtgccatgttcaagcttcct
tttgttccaatttatgagtatagattgatgaactttaagaagattattttcaacggcaac
ttgcgagtcgaatcggtgccatatgagagcatctgttttatttgtgggtatgccataatg
gcgaacatcttccaggtgttgcagaacgaagaaaaagcagtcagcgagttcaaagagcag
atcaattctattcttgaattccaaaatgaaatagaagaggtttcgttcggattgatgaac
aaactttcgttgtatgaaagtttagcagggaagagaaatatttatgagcagttgtgtaag
actacatcatgggaatgttccaatttcaagagccattatgtggagattcacgaaaagaac
aaattggaggttgagattgcatctttgcaaagtatgatctcggacgagaacttggaattg
cttcctgactacgcccaacgtttgcaggttttggaaacaatgggtttcatagatgaacag
caaaatgtggtattgaagggcagagtcgcctgtgaaatcaactctggttgggaacttgta
gtcacagaattggttttggataacttccttggagatttcgaaccagaagagattgttgca
ttgctttcgtgtttcgtctatgaaggtcgtactaatgaagaggagccaccattgataaac
ggacgattagaaagaggcaaaacaagaattttggaactaaccgagaagttgttagatgtg
tacggagaacatcaagtgtctttgacttctgaagaagaagaattcttggatagaaagaga
tttgccttgaccaatgtggtgtttgagtgggcaagaggtctttcattcaacgaggtcatg
caaatcagcccagaagcagaaggtaccattgttagagtcatcaccagattggatgaagtc
tgtcgtgaagtcaggaatgctgctttaatagttggtgattcaacattgtcccaaaagatg
agcgtcgcccaagagaagataaagagagatattgtcttctgtgcgtcgttgtacttgtag
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integrated database retrieval system
