Scheffersomyces stipitis: PICST_85815
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Entry
PICST_85815 CDS
T01023
Name
(RefSeq) component of small subunit processosome
KO
K14550
U3 small nucleolar RNA-associated protein 10
Organism
pic
Scheffersomyces stipitis
Pathway
pic03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PICST_85815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pic03009
]
PICST_85815
Ribosome biogenesis [BR:
pic03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
PICST_85815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BP28CT
U3snoRNP10
HEAT_HEATR1
mTOR_dom
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
4851475
NCBI-ProteinID:
XP_001387606
JGI:
85815
UniProt:
A3GGS6
LinkDB
All DBs
Position
1:1918609..1924240
Genome browser
AA seq
1836 aa
AA seq
DB search
MSSLADQLKVIKEKTASVVLDRKARSKIHSRSLIFDPKVASTQDYDYLYQLGLEGLDELS
EIDSRFSKFRHTLFSETSVSMDRNVQTKDVISQLDKNIDAFLTLAGPFYSLAPTVKAVEW
LVRRFHINMHNGEMLLLTSLPHYNQSVFVKILNVIPKNSFPKIFDWVVGYKDLLKNPPSS
SILKAFHNDFEFFKLYAMFLVEQLKNGTVYQEQLSFFLSTTVQLLASLSKSLDTLNENHL
PVVLEVVGFLLLPSKYETLRNIDVDTRLTAYSIIAVLASIIPISTELIRSFTESILQDPR
SLEPNSVRQTLIVLSQLWRFYQGDFSDREAIVKCFANLAPSKLIKVEHLVKDLVADNYKF
QKFLTFYFFATFPNPESYKIFQLVDLGKSELYFSEIAKQIVENSTATDKCRSVVIHICEE
LLKSNSELFIKALATQEMNIDALEMKLMTTLGSNSSVRDSDDVEFDAGEEDNNDEETEEV
AVQFATAANLDSIKSSSKSFFTSSSDSEFSKLTLDLISLLRNVTVKVQKSLLLKFTTSVF
SSIETGISFLIRIAFTPSIPLSIRLTAIRCTKWKLKEASTSSSSPLDLYLLIPIFLLGVY
DETRVVRAGFVQLLRFIKETTTSIHANKKKVKSVLFMEDVIYDTTEASKRAIISPNDALF
FTELLLKEDVLEDVIIDRSRLVPKFGQLILKTFVINQWSLNFFPVVFKWRAWNIVALENK
NGTEDRFFFTDSDLSEYFTKRSNWIQQANDAKIAFFEEVEGAIVGLVGGNSTNEAKTATE
VDWIIQSLNSQFSNLQIAVNSRLLEIFNNFSTVENRIKIVNKLIDLLNNDEPIESDPMDT
LQTLKLDQDLFISVLGNVQIGGQIPEQGPAKRRRRSSSSTKQAMAREDINNMASTHLKKL
TIILDLLETNLRNGTETIASPNLLQALFKILTDLDYLGNDGNLPVLYAQEALASCMILSI
VKMKNSDETFKFDSNSIRADLIVNSIRSSQSPQVQNRLLLVIAELASLAPEIVLHSVMPI
FTFMGAHTVRQDDEFSSSALQQTIAKVIPAVAANGSSSISNEIEFLLTSFVTAFQHIPRH
RRVKLFTYLIRTLGSDLSLHVLLFLMGQQYCSSLNKNKMADAQVILEFTSSFLKSFSAIE
QLEGISKFAELWDMIPIAELEANSEEYNKLSTRSIFGVSILSLTNSGLSTLRIEMLKYIS
SVVATENSNFDANTLKTKVAMVLLDSSINDDDEEKKSILGSFRNVAAFLLSSLDTFTNVS
RNSEIALSLYDLLANFLNLLPIHYFVDSIFESLDVGKFSDTLSIKVAKNLVILAGAKFES
ELSSINIDEKIEESVLEKLLPVLLHGIKKNVDIELEQAYLDTFAIIVNKFGASTKTLATP
TNSRLLLESLQAITSENCLLSESPETIISSINAITSIVNVLGVKTIGIFPKIVPPSLKIW
ETTTHSEDEESAKLIQSSIIVLLSCLIKKIPAFMTSSLDSIFITILSSDYVDNSIRTSVL
GLVVEHMDSSQVLKSLCNIWCNKKFYENDNTGNIGLYLNTMQSTIDKIDKKSAATQSTVF
IKWLIQAFEFRHYSEEADNKFDNNTIHRLESSFHSCGISYVMKLNDKKFRPLFATLVRWA
VEGEGSNFSENTEVSRLVAFFKFFNKMQEQLKSIITSYFSYLLDPVASVLTRFSSGQLKD
INLRRILLNSLTSSFKYDQDDYWSQQGRFDSICNPLLEQLTNIEEGIGKYLIKSITAFIN
NVASEEYNETLVHGLIKYISNEKEDNSSSTKIWTIRALKSIFQKMGEQWLTYLPTLIPYI
AELLEDDDQAVEMEVRSGLVRVIENVLGEPLDRYLD
NT seq
5511 nt
NT seq
+upstream
nt +downstream
nt
atgtctagtttagccgaccaattgaaggtcataaaggaaaagacagcttctgttgtcttg
gacagaaaagcgaggtctaaaatccattcaagatcactcattttcgaccccaaggtagcc
tctacccaggactatgactatttgtaccaattaggtcttgaaggcttggatgaactctct
gagatcgactccagattctccaaattcagacatacgctattttctgaaacctcagtttct
atggacagaaacgtccagacaaaagatgtcatttctcagctagacaagaacatcgatgcc
tttttgactttggctggccccttctattccttagcccccactgtaaaagctgtagaatgg
cttgtgagaagattccatatcaacatgcacaatggcgagatgttgttgctcacatcttta
cctcactataatcaatcggtattcgtcaagattctcaatgtcattcccaaaaacctgttc
cctaagatctttgactgggttgtgggctacaaagatttgttgaaaaacccaccttcaagc
tcaatcttgaaggcttttcataacgactttgaatttttcaaattgtatgccatgttttta
gtagagcagttgaagaacggtacagtctaccaggaacagttgctgttcttcttgtctaca
actgttcagttgttagcttctttgtctaagtcattggacacattgaacgaaaaccacttg
cctgtagtgttggaagtggtcggtttcttgttgcttccttctaagtatgaaactcttaga
aatattgatgtcgacaccagactcactgcctattctatcatagctgtgcttgcatctatt
attcccatttcgactgagttgatcagatcgttcaccgaatctatcttgcaagatccaaga
tcgcttgagcccaactctgtgagacagactttgattgtcttaagtcagttgtggagattc
taccagggagatttttctgacagagaagccatcgtcaaatgctttgccaatcttgcacca
tctaaattgatcaaggtggagcatctagtcaaggatcttgtagccgacaactacaagttc
cagaaatttttgactttctacttctttgcgactttcccaaatccagaatcgtacaagatc
ttccagcttgtagacttgggcaagtcagagttatatttctctgaaattgctaagcaaata
gtagaaaattcaactgccacagacaaatgcagatctgtagttattcacatctgtgaggaa
ttgttaaagagcaacagtgagctctttatcaaggctttggctacccaggagatgaacatc
gatgccttggaaatgaaattgatgacgactttgggaagcaacagtagtgttcgcgattct
gacgatgttgagtttgatgccggtgaagaggataacaatgacgaagaaaccgaagaggtt
gctgtccagtttgccacagcagctaatttggatagtatcaagtcgtcttcaaagtctttc
tttacttccagttcagactctgaattttccaagctcactttggacttgatctcattgttg
agaaatgtcaccgtaaaagtccagaagagcttgcttttgaagttcaccacttctgtattt
tctagtatagaaacaggcatttcgtttttgatcagaattgcatttactccttctattcct
ctttctatcagacttactgctattagatgtaccaaatggaaattgaaggaagcctcgact
agttcttcgtctccattggacttgtacttgttgatccctatcttcttgttgggagtctac
gacgaaaccagggtcgttagagcaggcttcgttcaacttttgagattcatcaaggaaaca
accacctccattcatgcaaataagaagaaggtcaaatcagtcttgttcatggaagatgtc
atctacgatactactgaagccagcaagcgagcaattatcctgcccaacgacgctttgttc
ttcactgagttgctccttaaagaggatgtattggaggatgttatcattgacagaagtcgt
ttggtccctaagtttggccagttaattttgaagacatttgtcatcaaccagtggtcgttg
aacttcttcccagtcgtattcaaatggagagcatggaacatcgtagctctcgaaaacaaa
aacggaactgaagacagattcttcttcaccgacagcgatttatctgagtacttcacgaag
agaagcaactggatccaacaggccaacgatgcaaagattgcattctttgaggaagttgag
ggtgctattgtaggactagtaggcggcaatagtaccaacgaagccaagactgcaactgaa
gtggactggattattcaatcgttgaacagccaattcagcaacttacaaatagctgtgaac
tccagattgcttgagatattcaacaacttctctacagtagaaaacagaatcaagattgtc
aacaagttgattgacttgcttaacaacgacgaaccaatagaaagtgatcctatggacacg
ttacagactttgaagttggaccaggacttgttcatatctgttttgggtaatgttcaaatt
ggtggtcaaattcctgaacagggtcctgcaaaaagaagaagaagatcatccagctctacc
aagcaggcaatggcaagagaagacatcaacaacatggcttccacccatttgaagaagctc
acaattatcttagatctcttggaaaccaatttgagaaatggaactgaaactattgccagt
cctaacttgttgcaagccttgttcaagatactcaccgacttagactaccttggaaatgac
ggtaatttgcctgtgttatatgcccaggaggctttggcttcttgtatgattttgagtatt
gtcaagatgaagaacagcgatgagacattcaaatttgattctaactctatcagagccgac
ttaatcgtgaactctattagatcatcgcaatctccgcaagttcagaatagattgttgttg
gtgattgccgagttggcatcgttggcaccagagattgtattgcactctgtcatgcctatc
tttacttttatgggagcccacacagttagacaagatgacgaattttctagttctgctttg
caacagactatcgctaaggttattccggccgttgcagctaatggttcctcgtctattagc
aacgaaattgaattcttgttaactagttttgtgaccgcattccaacacattcccagacat
cgtcgtgtcaagttgttcacatacttgatcagaactttgggctctgacttatcgttgcat
gttcttcttttcttgatgggacaacagtactgcagcagcttgaacaaaaacaagatggcc
gatgctcaggtgattttggagttcaccagttctttcttaaagagtttttctgcaattgaa
caacttgaaggtatttcaaagtttgctgaattgtgggatatgatccctatcgctgaattg
gaagctaactcggaagagtacaacaagttaagcactagatctatctttggtgtttccatc
ttgtctttgaccaactctggcttgtcaaccttgagaatcgagatgttgaagtacattagc
tcagttgttgctacggaaaattccaacttcgatgccaacactttaaagactaaggtggcc
atggtccttttagattcgtcgatcaatgatgatgacgaagaaaagaaatccattttgggg
tcctttagaaacgttgctgccttcttattgtcgagcttggacacctttaccaatgtttca
agaaacagcgaaatagctctcagcttgtatgacttgcttgccaacttcttgaacttgctt
cctatacattactttgttgattcgatttttgaatcattggacgtcggaaaattctctgac
actttgtccatcaaggttgctaaaaacttggttattttggcaggcgctaagtttgaaagt
gaattgagttcaattaatatcgatgaaaagatcgaggaaagtgttcttgaaaagttgttg
cctgtattattgcatggtatcaagaagaatgtggatatagaattggaacaggcttacttg
gatacatttgctattattgtcaacaagttcggagcttctacgaagactttagctactcct
accaattccagattgttgttggaatcccttcaagctataacctctgagaattgcttgttg
agtgaactgccagaaactattatttcgtccatcaatgccatcaccagcattgtcaacgta
ttgggcgtcaagacaattggtatcttccccaagattgttcctccatcactcaagatatgg
gaaacaactacccattctgaggatgaagaaagtgccaagttgatacagtcttcgatcatt
gtattgttatcttgcttaatcaagaaaattcctgctttcatgacaagttccttggactcg
attttcattactattctctccagtgactatgtcgacaacagcattagaactagcgtattg
ggattggtagtagagcatatggattcctcgcaagtgttgaagtccttgtgcaacatctgg
tgcaacaagaagttctacgagaacgacaataccggtaacatcggtctctacttgaacacc
atgcaatccaccatcgacaagatcgacaaaaagtctgctgctactcagtctactgttttc
ataaaatggttgatccaggctttcgaattcagacattactctgaagaagctgataacaaa
ttcgacaacaacaccatacacagattggaaagctccttccacagctgtggtattagctat
gtgatgaaattgaacgacaagaagttccgtccattgtttgctaccttggttagatgggct
gttgaaggtgaaggatcaaacttttctgaaaacaccgaggtttccagattggtagctttc
ttcaagttcttcaacaagatgcaagaacaattgaagagtatcatcacatcttacttctcg
tacttgttggatccagtagcctccgttttgactagattttcttctggccaactcaaggat
atcaatttgagaagaatactcctcaactccttgacatcttcattcaagtacgaccaggat
gactattggtcgcagcaaggtagattcgacagtatctgcaacccattattagaacagtta
accaacattgaggaaggtattggcaagtacctaatcaagagtatcactgccttcatcaac
aacgtagcctcggaagagtacaacgagactttggtacacgggttgattaagtacatatct
aacgagaaggaggataacagctcctctacgaagatctggaccatccgtgctttgaagagc
attttccagaagatgggagaacaatggttgacctacttgcctactttgattccatatatt
gctgaattattagaagacgatgaccaggctgtagagatggaagtgagaagtggattggtc
agagtgattgagaatgttttgggtgaaccattggatcgttacttggattaa
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