Scheffersomyces stipitis: PICST_87921
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Entry
PICST_87921 CDS
T01023
Symbol
PRP43
Name
(RefSeq) RNA helicase involved in spliceosome disassembly
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pic
Scheffersomyces stipitis
Pathway
pic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PICST_87921 (PRP43)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pic03041
]
PICST_87921 (PRP43)
03009 Ribosome biogenesis [BR:
pic03009
]
PICST_87921 (PRP43)
Enzymes [BR:
pic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PICST_87921 (PRP43)
Spliceosome [BR:
pic03041
]
Complex A
U2 snRNP components
U2 related factors
PICST_87921 (PRP43)
Complex B
PICST_87921 (PRP43)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
PICST_87921 (PRP43)
Ribosome biogenesis [BR:
pic03009
]
Eukaryotic type
90S particles
Helicases
PICST_87921 (PRP43)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
SRP54
AAA_19
HA2_N
Flavi_DEAD
AAA_23
AAA_30
T2SSE
Motif
Other DBs
NCBI-GeneID:
4837500
NCBI-ProteinID:
XP_001382436
JGI:
87921
UniProt:
A3LP11
LinkDB
All DBs
Position
2:1148127..1150513
Genome browser
AA seq
771 aa
AA seq
DB search
MVAERVFKKQKLDEESRAEIVAEEAEEKLRLHPHPVAPDVLVHHDAGEFSGMVRHKTDSQ
QAVKLETADINPFTGGKFSKQYFDILKVRRDLPVHAQRDEFLRIFQNTQIMVFVGETGSG
KTTQIPQFVLYDDMPHLAGTQVACTQPRRVAAMSVAKRVADEMDVELGEEVGYSIRFENK
TSNKTILKYMTDGMLLREAMEDHDLKRYSCIILDEAHERTLATDILMGLLKQVSVRRPDL
KIIIMSATLDAEKFQKYFNDAPLLAVPGRTHPVEIYYTPEYQRDYLDAAIRTVLQIHATE
DEGDILLFLTGEEEIEDACRKISLEGDELIREQDCGPIKVYPLYGSLPPHQQQKIFDPAP
ERLRPNGRPGRKVIVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKA
SAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLASTVLELKKLGIDDLVH
FDFMDPPAPETMMRALEELNYLQCLSDEGDLTAAGRMASQFPLDPMLAVMLIGSAAFNCS
EDILTIVALLSVPNVFVRPAAARKRADDAKMAFAHQDGDHVTLLNVYAGFISDEAQSIGV
HQWCRDNFLSYRSLTSAKSVRAQLRRIMERNDIDLNSTPFEDPSWAVNVRKALAAGFFMQ
VAKKKSAGKGYLTIKDNQEVLIHPSTVLATESEWVIYNEFVLTSQNYIRTVTTVRPEWLV
EFAPKYYNLDHFGKGDVKLSLERVIDRVETMKKLEDKSARKEKKKSKKSKA
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggttgctgaaagagtattcaagaagcagaaattggatgaagaatccagggccgagatt
gtggctgaagaagcggaagaaaagttaagattacatcctcatcccgtggcaccagatgtt
ctagttcaccatgatgctggtgaattctctggaatggttagacacaagacggattcgcag
caagctgtgaaattggagacagcagatatcaatcctttcacgggtggcaaattcagcaag
cagtatttcgacattttgaaggttagacgtgatttgccagtacatgctcagagagatgag
ttcttaagaattttccaaaacacccagatcatggtgtttgttggtgaaactggttctggt
aagactactcagattcctcagtttgttttgtatgatgacatgccacatttggctggaaca
caagtagcctgtacccaaccaagaagggtcgcagccatgtctgtggccaagagagtagca
gacgaaatggatgttgaactaggtgaagaggttggttacagcattcgttttgaaaacaag
acttcgaacaagaccattttgaagtacatgactgatggtatgttattaagagaagccatg
gaagaccacgatttgaagaggtactcctgtattattctagatgaagcgcacgaaagaact
ttggctactgatatcttgatgggtttattgaaacaagtcagtgtaaggagaccagacttg
aagatcattatcatgtcggctactttagatgctgaaaagttccagaagtatttcaatgat
gccccattgttagcagttcctggtagaacccatccagtagaaatctactataccccagaa
taccagcgtgattacttagatgcagctataagaacagttttgcagatacatgctacagaa
gatgagggcgatatattgttatttttgacaggtgaagaagaaattgaagacgcttgtaga
aagatctctttggaaggagacgagttgatcagagaacaagattgtggccctatcaaagtt
tatccattgtacggttccttgcctccacaccagcagcagaagattttcgatccagctccc
gaaagattgagaccaaatggtagacctggaagaaaggtaattgtttcaaccaacattgcc
gagacctctttgactatcgatggtattgtatatgtggttgatccaggtttctccaagcag
aaggtttataatccaagaatcagggttgagtcattgttggtatctcctatttccaaagca
tctgctcaacaaagagctggtcgtgctggtcgtaccagaccaggtaagtgtttcagattg
tacaccgaagaggctttccaaaaggagttgatagaacagtcatatcctgaaatcttgaga
agcaacttagcatccaccgtgttggaattgaagaaattgggaatagatgacttagttcac
tttgacttcatggatccaccggcccccgaaaccatgatgagagcattggaagaattgaac
tatttgcaatgtttatccgatgaaggagatttgaccgccgcaggtcgtatggcttcgcaa
tttcctttggatccaatgttagcagtgatgttgattggatcagctgccttcaactgttct
gaagatattttgactattgtagcattgttgtcggttccaaatgtctttgtcagacctgca
gcggccaggaagagagcagatgatgctaagatggcttttgcccatcaagatggtgaccat
gtcactttgcttaatgtctacgctggattcatttccgacgaagctcaaagtattggagta
caccaatggtgtcgggacaactttttgtcttatagatcattaacttctgccaagagtgtc
agagcacaattgcgtcgtatcatggaaagaaacgacatagacttaaacagcactccattt
gaagacccttcatgggccgtgaatgtcagaaaggctttggctgctggtttcttcatgcaa
gtggctaagaagaagtcagcgggcaagggttaccttactattaaggacaatcaagaagta
ttgattcatccttcgacggtattggctacagaaagtgaatgggttatttacaacgaattt
gtgttaacaagtcagaactacatcaggactgttaccacagtcagaccagagtggttggtt
gaatttgcacccaagtactataacttggatcactttggcaagggagacgtgaagttgtcg
ttggaaagagttatagatagagtggagaccatgaagaaattggaagacaagagtgctaga
aaggagaaaaagaagtcgaaaaagagcaaagcttag
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