Scheffersomyces stipitis: PICST_88597
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Entry
PICST_88597 CDS
T01023
Name
(RefSeq) predicted protein
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
pic
Scheffersomyces stipitis
Pathway
pic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PICST_88597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_88597
Enzymes [BR:
pic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
PICST_88597
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PICST_88597
mRNA degradation factors
3'-5' decay
Pan complex
PICST_88597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
Beta-prop_THOC3
WD40_CDC20-Fz
R1_ABCA1
WD40_like
Beta-prop_WDR3_1st
Motif
Other DBs
NCBI-GeneID:
4838097
NCBI-ProteinID:
XP_001383826
JGI:
88597
UniProt:
A3LRV8
LinkDB
All DBs
Position
3:complement(1043933..1047681)
Genome browser
AA seq
1183 aa
AA seq
DB search
MDGWTEISRIAATTQPPKGPSPHIHEPASITSLKFDSVQNLIWCGDSFGYTRSFTPGPNS
NGVNPYQQSLSFLPYTKFKSSLNNNPILQHLDHKDGILSLSSNCINFNNRRGLAKLSLSS
DSFVDANSVLFKNLTSLTTNCNTMNDIVVGSNLSLLKFDLNKPSHLMSFNHDGNISIVNQ
TSKFLTLGKANGALELFDPVSNSSIKSFQGHTGLLSDLDVQGSYIATCGYSIRPRRYNHN
SQNSNNDYMVDPLVNIYDVRMMRAVAPIPFPAGASCVRFHPKLPNIVLISSNSGQLQFVD
IYDQTNVFLYQADLMPTSQPRQPSQLSKAPFMTNLEISENGDFFAFSDSYATMHLWTLNN
SGSTITKDFVNFPASIEQPDVIIPPATEHIGVDDLVPLSTIGMPYYKDLLLSNYASDLSF
TKELAKLPDPIDHDLLVESESHVGFFPYDKSKYGPANTAKKYQSLKERSNIHSTVNVPKF
ISERNNALTKTMSNTSLALQNLNKEHHNEIFQYKVPLSRKKIPNCYSRLQIQYSKFGVKD
FDFSYYNRTDGLYCGLENDADNSYVNPLLQLYKFQPAFHNLMVRNLTNEWLPNDFETIIT
QKNPQGSSILNELGYLFDMMNKAKDKNVNMSNFSQVFKENRLAQTENLINLDEGAKLNSQ
ALRNLIIGFNKFLIAEVYKDLMNQARDSSISSLMTVSYVMEVRGTGPSCPIYDKQFGSQL
SLDLLTPPSNVLNKLSILLNPQINTQQQVVTPTTTRRNHNLITYLEYTINQFKTIPCQQH
QHQYPHTLEVRSSITKLPPLLSLNVNLSNEEFKLINGFKKWLVPEFYALNNNNDAPIAFK
PVLTQFDQDSTRYELLGYVCEISQQSDFSLGTHNLVSYVKIDGRWFLFNDFLVMQIPEEE
VFNLSYPWKKPVILVYHDSSISGIPFDLFQIETFANLPGLNDSIIYRDHFAGSIRESHKK
DYELLTRQEAPSLGTLIAIDAEFVNLRPEELEVRYDGHKKLIKPKFLSLARLSALRGDNG
EKQGVAFIDDYVVHTGEIYDYLTSFSGIEPGDLDPINSEKNLVTLQTVYRKLWLLLNLGV
VFVGHGLYNDFRGINLQVPQNQIRDTADFYYKSDFKRQLSLKFLAYVLLKEKVQTGNHDS
IEDAYTALLLYKKYIEITATGEYESTLNYIYSEGQQLRFKVPE
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggacggctggaccgaaatctcccgaatagcggccaccactcagcccccgaaaggtccc
tctccccatatccatgagccagcatccatcacttctctcaagtttgactcggtgcagaat
cttatatggtgcggtgacagttttgggtacacaagatcatttacaccaggtccaaattca
aatggagtcaatccctatcagcagagtttgctgtttcttccatatacaaagttcaagtcg
tctttgaacaacaatcccatacttcagcatctagaccacaaggatgggatcttgctgctt
ctgagcaattgcatcaacttcaacaaccgtagaggtttggccaagttatctttgctgtca
gattcgtttgttgacgcaaattccgttcttttcaagaacttaactagtctcacgaccaac
tgtaatactatgaacgatatagttgtaggtagcaatttgtcgcttctaaagtttgatctc
aataagccgtcacacctcatgtcgttcaaccacgacggcaacatatcgatagtgaaccag
acatcaaaattcttgacgttgggtaaagctaatggagctctagaactttttgatcccgta
agcaactcctctatcaagtcgttccagggccatacgggtttactttcagacttggacgtt
caaggctcctacattgcgacatgtggatattccattcgtccgagacgttacaaccataac
tcccaaaactccaataatgactacatggtagaccccctagttaacatctacgatgtgaga
atgatgcgtgctgtggccccaataccgttcccagcaggtgcttcctgtgtccgtttccac
ccgaagttacctaacattgtgctcatatcatccaatagtggccagcttcaatttgtagac
atctatgaccaaaccaatgtgttcttgtaccaagcagatttgatgcctacatcgcaaccg
cgccagcccctgcaattgtccaaggctccgttcatgacgaatcttgaaatcagcgagaat
ggtgacttctttgcctttagcgatagctatgcgacaatgcacttgtggaccttaaacaac
tctggttcgactataactaaagactttgtcaatttccctgctagcattgaacaaccggat
gtaatcatacctcctgcaactgagcatattggtgtggatgatttggttcctttatccaca
attggtatgccctactacaaggacttgttactctctaactatgcctcggacttgagcttt
accaaggagttggctaaattgcctgacccaatcgaccacgatctactcgtagaaagtgaa
tctcatgtcggttttttcccatacgacaagtccaaatacggtccagccaacaccgcaaag
aaatatcagtctcttaaggaaagaagcaacatccattcgacagtcaacgtacctaagttt
ataagtgaaagaaacaatgccttgaccaaaaccatgtccaacactagtcttgcacttcag
aatttgaacaaggaacatcacaatgaaatctttcagtacaaggtgcctttatctagaaag
aagatccccaattgctattcgagattgcagattcagtactccaagtttggtgttaaagat
ttcgatttcagctactacaacaggactgatggattgtactgcgggcttgaaaatgatgct
gataattcttatgtgaatcccttacttcaattatacaagtttcagccagctttccacaac
ttgatggttcgaaacttgaccaacgaatggttacccaatgattttgaaacaattatcact
caaaagaatccgcaaggatcttcgattctaaatgaattgggatatttgttcgacatgatg
aacaaggcaaaggacaaaaatgtgaatatgtccaacttttcacaggtgtttaaagagaat
agacttgctcagacagagaacttgattaatcttgacgaaggagccaagttgaattctcag
gctttgcgtaatttgatcattggtttcaacaaattcttgattgctgaagtatacaaggat
ttaatgaaccaggccagagactcctctatttcgagccttatgacagtgctgtacgtgatg
gaagttagaggaaccggtccatcttgccctatttacgataagcagtttggatcgcagttg
agtttagatttgcttacacctcccagtaacgtattgaacaagttgagtatattacttaat
ccacagatcaacacacagcagcaagtggtaacacctactacgaccagaagaaatcataat
ttgataacctacttggagtacaccattaaccagttcaagaccataccatgtcaacaacac
caacatcaatatccacacactttggaagtgcgttcttctatcacaaaattgcctccttta
ttatcgttgaatgttaacttgtccaacgaggaattcaagttgatcaatggattcaagaag
tggcttgttccagagttctacgccttgaacaacaacaatgatgcacccattgctttcaag
ccggttctcacacaatttgatcaggactcgactagatatgagttattgggttatgtttgt
gaaatcagtcagcaatctgatttttcattgggaacacataacttggtttcatatgtcaag
atagatggaaggtggttcttgttcaatgatttcttggtcatgcaaattccagaagaggaa
gtattcaacctttcgtatccatggaagaagcctgtcattttggtataccacgatagttct
atttctggtatcccttttgatttgttccaaatagagacgttcgccaatttgccgggattg
aacgattctatcatatatcgcgatcactttgctgggtcaattagggagtcccacaagaag
gattacgagttgttaactagacaggaagcaccaagtttgggcactcttattgccattgac
gccgaattcgtgaatttgagaccagaagaactcgaagtaagatacgacggccacaaaaag
ttaatcaagcccaagtttctttctttggcaaggttatcagctcttcgtggtgataatggt
gagaaacaaggagttgcatttatcgatgactacgttgtacacactggtgaaatctacgac
tatctcacaagcttctcaggtatcgaacctggagacttggaccctatcaactcggaaaag
aacttggttactttacagacagtttacagaaagttgtggttacttttgaacttaggtgtt
gtgtttgtaggacatggcttgtacaatgatttcagaggtattaacttgcaagtaccgcaa
aatcagattagggacacagccgatttctactacaaaagtgatttcaagagacaattgagt
ttgaaattccttgcctatgttctattgaaagagaaggtacagaccggtaatcacgactca
attgaagatgcctacactgcgttgttgctatacaagaagtatatcgagatcacagctact
ggtgagtacgagagtactttgaattacatctactcggaaggacaacagttgaggttcaaa
gtgcctgaatag
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