Scheffersomyces stipitis: PICST_90501
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Entry
PICST_90501 CDS
T01023
Symbol
PAB1
Name
(RefSeq) Polyadenylate-binding protein, cytoplasmic and nuclear (Poly(A)-binding protein) (PABP) (ARS consensus binding protein ACBP-67) (Polyadenylate tail-binding protein)
KO
K13126
polyadenylate-binding protein
Organism
pic
Scheffersomyces stipitis
Pathway
pic03015
mRNA surveillance pathway
pic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PICST_90501 (PAB1)
09123 Folding, sorting and degradation
03018 RNA degradation
PICST_90501 (PAB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_90501 (PAB1)
03041 Spliceosome [BR:
pic03041
]
PICST_90501 (PAB1)
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
PICST_90501 (PAB1)
mRNA cycle factors
Stress granule specific factors
PICST_90501 (PAB1)
Spliceosome [BR:
pic03041
]
Complex C
Other components
Complex C specific factors
PICST_90501 (PAB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RBD_DEAH11
RRM_occluded
YflT
SET_assoc
Motif
Other DBs
NCBI-GeneID:
4840386
NCBI-ProteinID:
XP_001385508
JGI:
90501
UniProt:
A3LXL0
LinkDB
All DBs
Position
6:777504..779759
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AA seq
632 aa
AA seq
DB search
MSAADANQLQESLEKLNLDSAPAAAEEEAVAAESAPAGEEGADSANVAESTASLYVGELN
TSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEG
RPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDMGQSK
CFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNI
DLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEING
QKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFG
TITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDVRRSQ
LEQQIQARNQMRMQNAAATGGIPGQFIPPMFYGQQGFFPPNGRGNAPFPGPNPQMIMRRG
QPFGGPEQWPRPGPNGQPVPVYGIPPQAYSDFNGQNIRQQRGYYPNRNQNKGRQQRDLAA
IIASAPPDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLDNQEILALLEDDELFT
NHFEDALTAFEEYKNSEAAAPVAPAAPAEPQA
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgctgacgccaaccaactccaagaatcgttggaaaagttgaacctcgattct
gctccagccgccgctgaagaagaagctgttgctgctgaatctgctccagccggtgaagaa
ggcgctgactctgccaacgttgctgagagcactgcctctttgtatgttggagaattgaac
acctctgtcaacgaagctacgttattcgagatcttctctcctattggccaggtttcgtct
atcagagtctgtagagatgctgtttcgaagaagtctttgggttacgcctacgtcaactac
cacaagatggaagacggagaaaaggctatcgaagaattgaactacagcccaattgaaggc
cgtccttgtcgtatcatgtggtctcagagagacccttctgccagaagatcaggtgacggc
aacattttcatcaagaacttgcaccctgccatcgacaacaaggctttacacgacaccttt
tccactttcggtaagatcttgtcgtgtaaggtcgccactgacgacatgggtcagtccaag
tgcttcggttttgttcactacgagactgccgaagccgcagaagccgccatcgaaaacgtt
aacggcatgttgttgaacgaccgtgaagtctttgttggtaagcacatctccaagaaggac
cgtgaatccaagtttgaggaaatcaaggccaacttcaccaacatctatgtcaagaacatt
gacttggaatactctgaagaggatttgaagaagttgttcactccatacggtgctatcact
tccatctacttggaaaaggacgccgaaggtaagtctaagggtttcggtttcgtcaactac
gagggtcacgaagccgctgtcaaggctgtcgaagagttgaacgacaaggaaatcaatggt
caaaagatctacgttggtagagctcaaaagaagagagaaagaatggaagagttgaagaag
cagtacgaaaacaccagattggaaaagttgtccaagtaccaaggtgtcaacttgttcatc
aagaacttggacgatactatcgactccgaaaagttggaagaagaattcaagcctttcgga
accatcacctctgctagagttatggtcgatgaaactggtaagtccaagggtttcggtttc
gtttgtttctcgtccccagaagaagccaccaaggctatcaccgaaatgaaccaaagaatg
ttctttggcaagccattgtacgtcgccttggctcaacgtaaggatgtcagacgttctcaa
ttagaacaacagatccaagcccgtaaccagatgagaatgcaaaatgctgctgctaccggt
ggaatcccaggtcaattcattcctccaatgttctatggccaacaaggtttcttcccacct
aacggtagaggtaacgctcctttcccaggtccaaacccacagatgatcatgagaagaggt
caaccattcggtggtccagaacaatggccaagaccaggtcctaacggccaaccagtccca
gtttacggtatcccaccacaagcttactctgacttcaacggtcaaaacatccgtcaacaa
agaggctactaccctaaccgtaaccagaacaagggccgtcaacaaagagacttggctgct
atcattgcctctgctcctcctgaccaacaaaagagaatcttaggtgaagaattgtaccct
aagattgttgctaccggcaaggctcaagaaccagaagccgctggtaagattaccggtatg
atgttggacttggacaaccaagagatcttagctttgttggaagacgacgagttgttcacc
aaccactttgaagatgctttgactgctttcgaggaatacaagaactcggaagctgctgct
cctgttgctccagctgctccagctgagccacaagcttaa
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