KEGG   Scheffersomyces stipitis: PICST_90571
Entry
PICST_90571       CDS       T01023                                 
Symbol
DHH1
Name
(RefSeq) RNA helicase of DEAD box family
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
Organism
pic  Scheffersomyces stipitis
Pathway
pic03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PICST_90571 (DHH1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pic03019]
    PICST_90571 (DHH1)
   03036 Chromosome and associated proteins [BR:pic03036]
    PICST_90571 (DHH1)
Enzymes [BR:pic01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     PICST_90571 (DHH1)
Messenger RNA biogenesis [BR:pic03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     PICST_90571 (DHH1)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     PICST_90571 (DHH1)
Chromosome and associated proteins [BR:pic03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    PICST_90571 (DHH1)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII NA-iREase2
Other DBs
NCBI-GeneID: 4840004
NCBI-ProteinID: XP_001385738
JGI: 90571
UniProt: A3LWX3
LinkDB
Position
6:complement(244211..246454)
AA seq 509 aa
MSEQNWKQNLNLPQRDTRPQTEDVLNTKGKSFEDFNLKRELLMGIFEAGFEKPSPIQEES
IPMALAGRDVLARAKNGTGKTASFIIPSLQQIKPKLNKIQALILVPTRELALQTSQVVRT
LGKHLGIQCMVTTGGTSLKDDILRLNDPVHVLVGTPGRVLDLAARSVADLSECPLFVMDE
ADKMLSREFKGIIEQILEFFPKNRQSLLFSATFPLAVKSFMDKHLNKPYEINLMDELTLR
GITQYYAFVEEKQKLHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAK
MPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGR
FGHLGLAINLMSWNDRYSLYKIEQELGTEIKPIPATIDRKLYVADNEDAIPKPFKIEQLP
KGNEKVHTRAGYEYKGQPEVQSGQQHAQQQLQPSQQPQQQLQQPQQPQAAPQGYPPAFNG
YPPYQQYPPQAGGYPPPQFNGYQAAPGQQ
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgtctgaacaaaactggaaacaaaacttgaaccttccacagagggatacaagaccacag
accgaagatgtcttgaacacaaagggtaagtcctttgaagacttcaatttaaagagagaa
ttgttgatgggcatttttgaggcgggattcgagaagccttcgcccattcaagaagaatcc
atcccaatggctttggcaggaagagacgtcttggccagagctaaaaacggtactggtaag
actgcatcgttcatcattccatcattgcaacagatcaaacccaagttaaacaaaattcaa
gccttgatcttggtgccaacaagagagttggcattgcaaacatcccaagttgtgagaacc
ttaggaaaacatttaggcattcaatgtatggtgaccactggtggtacttccttgaaggat
gacatcttgagattgaacgatcccgttcacgttttggtcggtactcctggtagagttttg
gatttggctgccagaagcgttgccgacttgtcggaatgtcccttgtttgttatggacgaa
gccgataaaatgttgtccagagaattcaagggcatcattgagcaaatcttggaatttttc
cccaagaacagacagtccttattattctctgctacttttccgttagccgtcaagtccttc
atggacaagcacttgaacaagccctacgagattaaccttatggacgaattaacgttgaga
ggtatcactcaatactacgcatttgttgaagaaaagcagaagttgcactgtttgaatact
ttgttcagcaaattacaaatcaatcagtctattatcttctgtaactctaccaacagagtt
gaattgttggccaaaaagatcactgaattgggctactcttgttactactcgcacgccaag
atgccccaacaggcaagaaacaaagttttccatgaatttagacaaggaaaggtccgtaac
ttggtctgctctgatttattgaccagaggtattgatattcaagctgtcaacgttgtcatc
aactttgatttcccaaagactgccgaaacctatttgcatagaattggtcgttcaggtaga
ttcggtcacttgggtttggccattaatttgatgagttggaatgatcgttactccttgtac
aagattgaacaagaattgggtactgagatcaagccaattccagctaccatcgacagaaag
ttgtatgttgctgataacgaagatgctattcccaaaccattcaagattgaacagttgcca
aaaggtaacgagaaggttcataccagagctggctatgagtacaaaggccagcctgaagtt
caatcgggccagcaacacgcccaacaacaactccaaccttcacaacaaccccaacaacaa
ctccagcaaccacaacaaccacaagctgctcctcaaggttacccaccagctttcaatggc
tatccaccataccagcaatacccaccccaagctggcgggtaccctccaccacaattcaac
ggctaccaagcagctcctggtcaacagtag

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