Pseudomonas iranensis: HU724_005190
Help
Entry
HU724_005190 CDS
T07894
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pie
Pseudomonas iranensis
Pathway
pie02020
Two-component system
pie02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pie00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HU724_005190
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HU724_005190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pie03021
]
HU724_005190
Transcription machinery [BR:
pie03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HU724_005190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
RRP4_S1
DUF4741
HTH_21
TrmO_C
Motif
Other DBs
NCBI-ProteinID:
QXI23667
LinkDB
All DBs
Position
complement(1190126..1191616)
Genome browser
AA seq
496 aa
AA seq
DB search
MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNAD
PLADNAEQKPAEIQEPSYQETAPTVDNLEDGEWNERIPNELPVDTAWEDVYQTSASSLPS
SDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDETLEEIL
EAFDPELDIELDEIEAVLHRIQQFEPAGIGARNLSECLLLQLRQLPAKTPWLAEAKRLVA
DYIDLLGSRDYSQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESTEAEYVIPDVIVRKD
NERWLVELNQESVPRLRVNAQYAGFVKRADTSADNTFMRNQLQEARWFIKSLQSRNETLM
KVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELKY
FFSSHVSTAEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAKY
RESLGIAPSSERKRLM
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatcgctagtcttgagaatgggccagcagctgacgatgacaccgcagctgcaa
caggccatccgcctgctccaattgtcgaccctggacctgcaacaggagatccaggaggct
ctggaatccaatccgatgctcgagcgccaggaagaaggcgacgacttcgacaacgccgat
cctctggccgacaacgccgaacagaagcccgccgaaatccaggaaccctcctaccaggaa
accgccccgacggtggacaacctcgaggatggcgaatggaacgagcgcatccccaacgaa
ctgccagtagataccgcctgggaagacgtctaccagaccagcgccagtagcctgccgagc
agcgatgacgatgagtgggatttcaccacccgcacgtccgccggcgagagcctgcagagc
catctgctctggcaactgaacctggcgccgatgtccgacaccgatcgcctgatcgccgtc
accctgatcgactgcatcaacaatcagggctatctggacgaaacactcgaagaaattctt
gaagcgttcgatcctgaactggacatcgagctcgacgagatcgaagccgtcctgcatcgc
atccagcaattcgagcccgccggtatcggcgcccgcaacctcagcgaatgcctgctgctg
caacttcgccagttgccagccaaaacaccgtggttggccgaggccaagcgcctcgtcgcc
gattacatcgacctgctcggcagccgcgattacagccagttgatgcgccggatgaagctc
aaggaagacgagctgcgccaggtcatcgaactggtgcagagtctcaatccgcgtccgggc
tcgcagatcgagtcgaccgaagccgaatacgtcattcccgatgtgatcgtgcgcaaggac
aacgagcgctggctggtcgagctgaaccaggaatcggtgccccgccttcgcgtcaacgcc
caatacgccggttttgtgaagcgtgccgacaccagcgccgacaacaccttcatgcgtaat
caattgcaggaagcccgctggttcatcaagagcctgcagagccgcaacgaaaccctgatg
aaagtggccacgcagatcgtcgaacatcagcgcggtttcctcgaatacggcgacgaagcg
atgaagccgttggtattgcatgacatcgccgaagcggtcggcatgcacgaatcgacgatt
tcccgggtgaccacgcaaaaattcatgcataccccgcgcggtatttatgagctgaaatac
tttttctccagccacgtcagcaccgccgaaggcggcgaatgctcgtccacggcgatccgc
gcgatcatcaaaaaactggtcgctgcggaaaatcagaaaaagccgttgagtgacagcaag
atcgctggtttactggaggcacaaggcattcaggtggctcgccgcaccgtcgccaagtac
cgcgaatccctcggaatcgcgccttcgagcgaacgcaagcggttgatgtaa
DBGET
integrated database retrieval system
