Pseudomonas iranensis: HU724_005730
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Entry
HU724_005730 CDS
T07894
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pie
Pseudomonas iranensis
Pathway
pie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU724_005730 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pie03019
]
HU724_005730 (rhlB)
Enzymes [BR:
pie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HU724_005730 (rhlB)
Messenger RNA biogenesis [BR:
pie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HU724_005730 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-ProteinID:
QXI23775
LinkDB
All DBs
Position
complement(1310198..1311676)
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AA seq
492 aa
AA seq
DB search
MTVLKALKKMFGKSEAEQLAPVPSAPSHAPGHHTDAPQADRPAPAAAPKPEEIPAAPAPI
AVEPAPSEAPKPARPRREPKPKAPVIPWKLEDFVVEPQEGKTRFHDFNLAPELMHAIQDL
GFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRA
LIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLL
DFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDVM
NLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLFNLINDNGWERVMVFANRK
DEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGIS
HVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPSIEEKLGRKISCETPPT
HLLRAVERKRPQ
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgctcaaagcactcaagaagatgttcggtaaaagcgaggctgagcagctcgcg
ccagttcccagtgcgccgtcgcacgcccccggtcatcacaccgatgccccgcaggccgac
cgccccgctcccgcagccgcaccgaagccagaagaaatacccgctgcgccagcgccaatt
gccgtagagcctgcacccagcgaagcgccgaaaccggccaggccacgtcgcgaaccgaag
cccaaggcaccggtcattccatggaaactcgaagacttcgtcgtcgagccgcaggaaggc
aaaacccgctttcacgatttcaaccttgccccggaactgatgcacgccatccaggacctg
ggctttccgtactgcacgccgatccaggcgcaggtgctgggtttcaccctcgccggcaaa
gacgccattggccgcgcgcagaccggcaccggcaagaccgccgcgttcctgatctcgatc
atcacccagttgctgcagacgccgccgccgaaagagcgctacatgggcgaaccgcgcgca
ctgatcatcgcgccgacccgcgagctggtggtgcagatcgccaaggacgccgctgacctg
accaagtacaccggcctcaacgtaatgaccttcgtcggtggcatggacttcgacaaacag
ctcaaacacctcgaagcgcgccactgcgacattctcgttgcaacaccggggcgcctgctc
gacttcaaccagcgcggcgacgtgcatttggacatggtcgaagtgatggtgctggacgaa
gccgaccgcatgctcgacatgggtttcatcccgcaagtgcggcagatcattcgccagacc
ccgccgaagtccgaacgccagactttgctgttctccgcgaccttcaccgaagacgtgatg
aatctggccaagcaatggaccaccgacccgtccattgtcgagatcgaatcactcaacgtc
gccagcgacaacgtcgagcaacacatctacgccgtggccggtgccgacaagtacaagctg
ctcttcaacctgatcaacgacaacggttgggagcgcgtgatggtgttcgccaaccgcaag
gacgaagtgcgccgcatcgaagaacgtctggtgcgcgacggtgtgaacgctgcgcaactg
tccggtgacgtaccgcagcacaagcgcatcaagactctggaaggcttccgcgaaggcaag
attcgcgtgctggtggccaccgatgtcgccggtcgcggcatccacatcgacggcatcagc
cacgtgatcaacttcaccctgccggaagtgccggacgactacgtgcaccgcattggccgt
accggtcgtgccggcgctgacggtgtgtcgatcagctttgccggcgaggacgactcctac
cagttgccgtccatcgaagaaaaacttggtcgcaagatcagctgcgaaaccccgccgacg
catctgctgcgtgcggttgagcgaaagcgtccgcagtaa
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