Pseudomonas iranensis: HU724_007820
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Entry
HU724_007820 CDS
T07894
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pie
Pseudomonas iranensis
Brite
KEGG Orthology (KO) [BR:
pie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pie03019
]
HU724_007820 (hrpA)
Enzymes [BR:
pie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HU724_007820 (hrpA)
Messenger RNA biogenesis [BR:
pie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HU724_007820 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
AAA_25
T2SSE
NACHT
ABC_tran
nSTAND_NTPase5
SLFN-g3_helicase
AAA_30
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
QXI24173
LinkDB
All DBs
Position
1764018..1767929
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDESPSIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEAKLAQWVARMQASCDQVLARR
ASLPVIRYDDSLPIAAKRDEIKKALEQHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEELGTPLGALVGYQVRFEDQSDANTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDV
LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYS
EEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEITAFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDPDSDFAGLVNLWRGFEEQRQALTANPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLSLNKEPADYPKLHKAVLVGLLSQIGQKTEDGDYLGARQRRFWIHPSSG
IGKKRPQWLMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAY
EQITLFGLIVVGRRPVHYGPVDPVVSRELFIREGLVRGEIQSRAKCLSANQKLLEQLDEL
EAKARRRDILADEETLYAFYDARLPAEIHQTATFDSWYKVNSQKDPQLLIMREEDVLARE
ASEVTARDYPDTLHIGDLELALTYHFEPNHPRDGVTLRVPAPLLPMLPPERLEWLVPGLI
EAKCIALVRNLPKALRKNFVPVPDFIKAALQRMTFAEGSLPQALGRELLRMTGARVSDDA
WAEAAQQVESHLRMNLEIVDGEGKFLGEGRDLAELTARFAEASQAALAVPQSAKSQQPVE
AKVFAPVAEKTQQKIAGLSMTVYPALVEEGGTVKEGRFSTPAEAEFQHRRALQRLLMQQL
AEPAKFLRGKLPGQTELGLLYRELGRVDALVEDILLASLDSCILEGEDPLPRDGAGLAAL
AERKRGNWTEHAERVARLTLEILKIWHGLQKRFKGKIDLAQAVALNDIKQQIGNLVYPGF
VRETPMQWLKELPRYLKAVEQRFEKLGAQVQKDRVWSGELAGLWAQYQTRAAKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWSQVEP
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgaatcgccctccatcgacaaactgctgaaaaacctcgatcacgccatgctc
gccgaccgtcaccggctgcggcggcagttgcttgagctgcgcaagaaacccgacgaagcc
aaactggcccagtgggtggcgcggatgcaggcgtcctgtgatcaggtactggcgcgtcgc
gcgagcctgccggtgattcgttacgacgacagtttgccgatcgcggccaagcgcgacgag
atcaaaaaggccctggagcaacatcaggtgctgatcatcgccggcgaaaccggttcgggc
aaaaccacccagttgccgaagatctgtctggaaatcgggcgcggccagcacggtctgatc
ggccatacccagccgcgtcggatcgccgcgcgcagtgtcgccagccgtgtcgccgaagag
ctcggcacgccgctcggtgcgctggtcggctatcaggtgcgcttcgaggatcagagcgat
gccaacaccctgatcaagctgatgaccgacggcattctgctggcggaaacccagaacgat
cgttatctggaacgctatgacacgatcatcgtcgacgaagcacacgaacgcagcctcaac
atcgatttcctcctcggctacctgaaaaccctgctgccacgccgtcccgacctcaaggtc
atcatcacgtcggcgaccatcgatctggagcgcttctccaagcacttcgatgacgcgccg
atcgtcgaagtgtcgggtcgtactttcccggtggaaacttggtaccggccgctgaccctg
gagcaggacgaagagggcaaccgggtcgaggacgacctgaccgtcgatcaggcgattctc
gccactctcgacgaaatcgccgcctacgagcgcagcgaacgacgcagccccggcgatgtg
ctggtgttcctgcccggcgagcgcgagattcgcgacgccgccgacatgttgcgcaaggcc
cagctcaaacacaccgaaatcctgccgctgtacgcgcgcctgtcgccggctgaacagcag
cggattttccagtcgcatccgggccgccgcgtggtgctggcgaccaacgtcgccgagacc
tcgctgaccgtgccgggcattcgctatgtgattgacagcggcaccgcgcgcatcagtcgt
tacagctaccgcgccaaggtccagcgcttgccgatcgaagcgatttcccaggccagcgcc
aatcagcgtaaaggtcgttgcggccgggtcgagccgggtatctgcgtgcgtttgtacagc
gaagaggacttccttgggcggccggaatttaccgatccggaaattctgcgcaccaacctc
gccgccgtgatcctgcagatgctccatctgcgcctcggcgaaatcaccgcgttcccgttt
atcgagccgccggacggcaaggcgatcagcgacggtttcaacctgctgcaagagctgtcg
gcggtggatcgcaacagtcagctgacaccgctcggtcgccagttggcgcgcttgccggtc
gacccgcgcatgggccgcatgctgctggaagcggccaagctcggcagtctgcaggaagtg
ctgatcgtcgccagtgcgatgtcgattcaggacccgcgcgaacgtccaccggagcgtcag
caagcggcggatcaggcccatgcgcaatggaaggatccggattcggacttcgccgggctg
gtcaatctgtggcgtggttttgaagaacagcgccaggcgctcacggccaatccgctgcgc
aattggtgccggaagaatttcctcaattacctgcgcctgcgcgagtggcgtgattctcat
cgtcagttgagcctgatctgccgcgacatgcagttgagcctgaacaaggagccggcggat
tatccgaagctgcacaaagcggtgctggtcggcttgctcagccagattggccaaaaaacc
gaagacggcgattacctcggcgcgcggcagcggcgcttctggattcacccgtcgtcgggc
atcggcaagaagcgcccgcagtggctgatgaccgccgaactggtggaaaccaccaagctt
tacgcgcgcatggtcgccaagatcgatgccgactggatcgagccgctggccgggcacctg
atcaagaagaatcacttcgagccgcattgggagaagaagcgcggccaggtcgtagcctat
gagcagatcaccctgttcggcctgatcgtcgtcggtcgtcgcccggtgcattacggcccg
gtcgatccggtggtatctcgtgagctgtttatccgcgaaggtctggtgcgcggtgagatt
cagtcgcgggccaaatgcctgagcgccaatcagaaactgctcgagcagctcgacgaactg
gaggccaaggcgcgccggcgcgacattctcgccgacgaagaaaccctctacgccttctac
gatgcgcgtctgccggcggagatccatcagaccgcgaccttcgacagttggtacaaggtc
aacagccagaaagatccgcagttgctgatcatgcgcgaagaagacgtattggcccgcgag
gccagcgaagtcaccgcccgtgattacccggatacgttgcacattggcgatctggagctg
gcgctgacttatcatttcgaacccaatcacccgcgcgacggcgtgaccttgcgcgtgccg
gcgccgctgctgccgatgttgccgccggagcgtctggaatggctggtgccgggcttgatc
gaggccaagtgcatagccctggtgcgcaacctgccgaaagccctgcgcaagaacttcgtg
ccggtgccggacttcatcaaggccgcgttgcagcgcatgactttcgccgaaggttcgctg
ccgcaagcgctcggtcgcgagctgctgcgcatgaccggcgcgcgggtcagcgatgacgcg
tgggcggaagcggcgcagcaggttgaaagccatctgcgcatgaacctggaaatcgtcgac
ggcgagggcaagtttcttggcgaaggccgcgatctggctgagttgactgcacgtttcgcc
gaagccagccaggccgcgctggcggtgccgcagagtgcgaaaagtcagcagccggtcgag
gcaaaagttttcgcgccggtggcggaaaagacccagcagaagatcgccgggttgtcgatg
acggtgtacccggcgctggtggaagagggcggcacggtcaaggaagggcgcttctcgacc
ccggccgaagccgagttccagcaccggcgcgccttgcagcgtttgctcatgcagcaattg
gccgagccggcgaaattcctccggggcaagttgcccgggcagactgaactgggtctgctg
tatcgcgaactgggccgggtcgatgcgctggttgaagacattctgttggccagcctcgac
agctgcattctcgaaggcgaagacccgttgccccgtgatggcgccggattggcggcactg
gccgagcgcaagcgcggcaactggaccgagcacgccgagcgcgtcgcgcggctgacgctg
gaaatcctcaagatctggcacggtctgcaaaaacgcttcaagggcaagatcgatctggcg
caagcggtggcactcaacgacatcaagcagcagatcggcaatctggtctatccgggtttc
gtccgcgaaacgccgatgcagtggctcaaggagttgccgcgttacctgaaagcggtcgag
caacgtttcgagaaactcggtgcgcaggtgcagaaggatcgggtctggagcggcgaactc
gctggcctgtgggcgcaataccagacccgcgcggccaagcatgcgcaggaaggcaagcgt
gatccgcagctggagttgtaccgctggtggctggaggaataccgcgtgtcgttgttcgcg
caacagttgggcaccaaagtgccgatctccgacaagcgcctgagcaaacagtggagccag
gtcgagccctga
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