Pseudomonas iranensis: HU724_016005
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Entry
HU724_016005 CDS
T07894
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pie
Pseudomonas iranensis
Brite
KEGG Orthology (KO) [BR:
pie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pie03032
]
HU724_016005
03400 DNA repair and recombination proteins [BR:
pie03400
]
HU724_016005
Enzymes [BR:
pie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HU724_016005
DNA replication proteins [BR:
pie03032
]
Prokaryotic type
DNA Topoisomerases
HU724_016005
DNA repair and recombination proteins [BR:
pie03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HU724_016005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QXI20537
LinkDB
All DBs
Position
3596997..3598034
Genome browser
AA seq
345 aa
AA seq
DB search
MPDTVLTDALPADLHYVDDTQPGITRKKLRGKFVYFEPSGQRITDPDEIKRINALAVPPA
YTDVWICADPCGHLQATGRDARGRKQYRYHARWREVRDADKYSRLRDFGMALPKLRRKLE
ALLDEPGFSRDKVMATVITLLDATLIRVGNTQYARDNRSYGLTTLRSRHVEVNGSAILFQ
FRGKSGIEHQITVKDRRLARIIKRCLEIPGQNLFQYLDENGERHNVTSSDVNAYLQKLTG
AAFTAKDYRTWAGSALALSVLRELQHESETEAKRHVVEAVKNVAKQLGNTPAVCRKCYIH
PAVVEHFMLGALAELPRPRVRKGLRAEEVALAMFLERMCEVSEAS
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgcccgataccgtgctgacagatgctctgcccgccgatctgcattacgtcgatgacact
cagcctggtatcacccggaaaaaactgcgcggcaagttcgtctatttcgaaccatcgggc
cagcgcatcaccgacccggacgaaatcaaacgcatcaatgccctcgcggtaccaccggcc
tacaccgatgtatggatctgcgccgacccgtgcggccatttgcaggccaccggccgcgat
gcgcgcgggcgtaaacagtaccgttatcacgcacgctggcgcgaagtgcgcgacgccgac
aaatactcgcgcctgcgcgacttcggcatggccctgcccaaactgcggcgcaagctcgag
gcgctgctcgatgagccgggcttcagccgcgacaaggtcatggccacggtgattaccttg
ctcgacgccacgctgatccgcgtcggcaatacccaatacgcacgggacaatcgctcttac
ggtttgaccacgttgcgcagccggcatgtcgaggtcaacggcagcgcgatcctgttccag
ttccgtggcaagagcggcatcgagcaccagatcaccgtcaaggaccgtcgcctggcgcga
atcatcaagcgctgcctggaaattcccgggcaaaacctgtttcagtatcttgatgaaaat
ggcgaacggcacaacgtcacctcctccgacgtcaatgcctatctgcaaaagctcaccggc
gcggcgttcaccgccaaggactatcgcacctgggcgggcagcgccctggcgttgtcggtg
ctgcgcgagttgcagcatgagtcggaaaccgaagccaagcgccatgtggtagaagcggtg
aagaacgtcgccaaacagctgggcaacacgccggcggtgtgccgcaagtgctacatccac
cccgcagtggtcgaacatttcatgctcggcgccctcgccgaactgccccgtccgcgcgtg
cgcaaaggcctgcgcgccgaggaagtagccttggcgatgtttctcgagcggatgtgtgag
gtaagcgaggcgtcttga
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