Pseudomonas iranensis: HU724_016115
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Entry
HU724_016115 CDS
T07894
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
KO
K11900
type VI secretion system protein ImpC
Organism
pie
Pseudomonas iranensis
Pathway
pie02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
pie00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
HU724_016115 (tssC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pie02044
]
HU724_016115 (tssC)
Secretion system [BR:
pie02044
]
Type VI secretion system
Imp/Vas secretion system core components
HU724_016115 (tssC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VipB
VipB_2
Motif
Other DBs
NCBI-ProteinID:
QXI20556
LinkDB
All DBs
Position
3618346..3619824
Genome browser
AA seq
492 aa
AA seq
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MSKESAAAQVLVADEPLSLLDQLLANTTMLPSQEGYVVARQGVAAFISEILQSGDHQQPV
NKHRVDHMIAEIDRALSQQMDVILHQPQFQQLESAWRGLKLLVDRTDFRENIKLEMLHVT
KEELSDDFDNAGDITRSGLYKHAYTSGYGQFGGEPIAAMIGNYTFGPSSPDMKLLSYVAS
VGAMAHAPFVMAAGPEFFNLKSYQDLPSIKEVSDIFEGPGHTKWRGLREMEDSKYIAATL
PRFLLRSPYDGLENRIRSFAYDENVDGNHDNYLWGNTAFLMASRITDSFARYRWCPNIIG
PQSGGAVDDLPVHLYESLGQLQAKIPTEVLISDRKEFELAEAGFIPLTMRKDSDNAAFFS
ANSIQKPKNFPKTREGQQAQTNYKLGTQLPYLFIVNRLAHYIKVLQREQIGSWKERQDLE
RELNTWLKQYIADQENPSSDVRSRRPLRAAQIVVQDVAGDPGWYQVSLAVRPHFKYMGAN
FEISLVGRLDTQ
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaggaaagcgccgccgcccaagtgttggtggctgacgaaccgctgtcgttgctt
gatcaattgctggccaacaccaccatgctcccctctcaggaaggctacgtcgtggctcgc
cagggcgtggccgcgtttatcagcgagatcctgcaaagcggtgatcaccagcagccggtc
aacaagcaccgggtcgaccacatgattgccgaaatcgaccgcgccctgagccagcagatg
gatgtgatcctgcatcagccgcagttccagcaactggagtcggcatggcgtggtctgaag
ttgctggtggaccgcacggattttcgcgaaaacatcaagctggagatgctgcatgtcacc
aaagaagagctgtcggacgacttcgacaatgccggcgatatcacccgtagcggcctgtac
aagcacgcctacacctctggctacgggcagttcggtggcgagccgattgcggcgatgatt
ggcaactacactttcggcccgtcgtccccggacatgaagctgctgagctacgtcgcctcc
gttggcgccatggcccatgcccctttcgtaatggccgccggtcctgaattcttcaatctc
aagagctatcaggatctgccgtcgatcaaggaagtcagcgatatttttgaagggcccggc
cataccaaatggcgcggcctgcgcgagatggaagactccaaatacatcgccgcgacgctg
ccgcgcttcctgctgcgctcgccctacgacggcctggaaaaccggatccgcagcttcgcc
tacgacgaaaacgtcgacggcaaccacgacaattacctgtggggcaacaccgcgtttctg
atggcgtcgcgcatcaccgacagcttcgcacgctaccgctggtgcccgaacatcatcggc
ccgcaatccggcggcgcggtggatgatctgccggtgcacctgtacgaatccctgggccag
ttacaggccaagatccctaccgaagtgctgatttccgatcgcaaggaattcgagctggcc
gaagccggtttcattcccctgaccatgcgcaaagacagcgacaacgcagcgttcttctcc
gccaactcgatacagaaaccgaagaatttccccaagacccgcgaaggccagcaagcccag
accaactacaagctcggcacccagttgccgtacctgtttatcgtcaatcgcctggcccat
tacatcaaggtactgcaacgcgagcagatcggcagttggaaggaacgccaggacctggaa
cgcgagttgaacacctggctcaagcagtacatcgccgatcaggaaaacccatcgtcggat
gtacgcagccgtcgacccttgcgcgccgcgcaaatcgtcgtccaggacgtggcgggcgat
ccgggctggtaccaggtgtcgttggccgtgcgcccgcacttcaagtacatgggcgccaac
ttcgagatctcactggtgggccggctggacacccagtaa
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