Pseudomonas iranensis: HU724_019500
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Entry
HU724_019500 CDS
T07894
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pie
Pseudomonas iranensis
Brite
KEGG Orthology (KO) [BR:
pie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pie03032
]
HU724_019500 (topA)
03400 DNA repair and recombination proteins [BR:
pie03400
]
HU724_019500 (topA)
Enzymes [BR:
pie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HU724_019500 (topA)
DNA replication proteins [BR:
pie03032
]
Prokaryotic type
DNA Topoisomerases
HU724_019500 (topA)
DNA repair and recombination proteins [BR:
pie03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HU724_019500 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QXI21198
LinkDB
All DBs
Position
complement(4343640..4346273)
Genome browser
AA seq
877 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
GPVLSPKEKARKQLVSRMGVDPEHGWKAQYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSEPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGST
VRFEVAREKGEAFKPLNEAQAMAALEKLKSSSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVAMARTYIEDEFGKKYLPESPN
VYSSKEGAQEAHEAIRPSDANTTPSKLAGMERDAERLYELIWRQFLACQMLPAQYLSTTV
SVGAGDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDVMKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAHGERDWKNVLDEFYGDFKKKLEVAENPDSGMRANQPVMT
DIPCTTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEEGSYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPECKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVIEILPHKDEIDPKYHFLCEAPQKDPDGLPAVIRYSRKTK
EQYVQTEVDGKPTGWKAYYDGGKWTVEDKRSAKAKAE
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtat
ctgggcaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaagagccagccgccaagcgcggcaaggctgctgcgggcgaa
ggtccggtgctctcgccgaaagagaaagcgcgcaagcagctggtctcgcgcatgggcgtc
gatccggagcacggctggaaagcccagtacgagatccttcccggcaaagagaaggtcatc
gaagagctgcgccggctcgccaaggatgctgacaccatctatctcgcaaccgacttggat
cgcgagggggaagccattgcctggcacctgcgcgaagccatcggtggtgacgacagccgc
tacaagcgcgtggtgttcaacgagatcaccaagaaggcgattcaggaagccttctccgag
ccgggcgagctggacattgatcgtgtcaacgcccagcaggcgcgtcgtttcctcgaccgc
gtcgtcggctatatggtctcgccgctgctgtgggccaagatcgcccgtggcctgtccgcc
ggtcgcgtgcaatcggttgcggtaaaactggtggtcgagcgtgagcgcgaaatccgtgcg
ttcaatcccgaagaatactgggaagtgcatgctgatctcggcactgccaaaggctcgacc
gtgcgtttcgaagtggctcgcgaaaaaggcgaagccttcaagccgctgaacgaagcccag
gccatggctgcgctggagaagctcaagtcctccagctacagcatcgtcaagcgcgaagac
aaaccgaccagcagcaagccgtcggcgccgttcatcacgtcgaccttgcagcaggctgcg
agcaaccgcctcggtttcggcgtgaagaaaaccatgatgatggcccagcgtctgtacgaa
gccggctacatcacttacatgcgtaccgactcgaccaatctctcggccgacgccgtggcg
atggcgcgcacttacatcgaggacgaattcggcaagaaatacctgccggaatcgccgaac
gtctacagcagcaaggaaggcgcgcaagaggctcacgaagcgattcgtccgtccgacgcc
aacactacgccaagcaagctggcgggcatggagcgtgatgccgagcgtctgtacgagctg
atctggcgccagttcctcgcctgccagatgctgccggcgcagtacctgtcgaccaccgtc
agcgtcggcgctggcgacttcgaactgcgcgccaagggccgtatcctcaagttcgacggt
tacacccgggtgatgccgcagattgccaagcctggcgatgatgacgtgctgccggacatg
gcccagggcgatgtgatgaagctgatcaagctcgatccgtcgcagcatttcaccaagcca
ccggcgcgttactccgaggccagtctggtcaaggaaatggaaaagcgcggcatcggtcgt
ccttcgacctacgctgcgatcatttcgaccattcaggatcgcggttatgtgaccctgcac
aaccgtcgtttctactcggaaaagatgggcgacattgttaccgagcgtctgtcggagagc
ttctccaatctcatggactacggcttcactgccggcatggaagagaacctcgatgacgtg
gcgcatggcgagcgcgactggaaaaatgtgctggacgagttctacggcgacttcaagaag
aaactcgaagtagcggaaaacccggacagcggcatgcgcgccaaccagccggtcatgact
gacattccgtgcaccacgtgcggtcgtccgatgcagattcgtactgcctcgactggcgtg
ttcctcggctgctcgggctacagcctgccgccgaaagagcgctgcaaggccaccgtcaat
ctggtgccgggcgatgaaatcgcagcggacgacgagggcgaatcggaatcgctggtactg
cgtggcaagcatcgctgcccgatctgcagcacggcgatggacgcctacctgctggacgaa
aagcgcaagttgcacatctgcggcaacaacccggattgcgccggttacgaaattgaagag
ggcagctatcgcatcaagggctatgaaggtccgagtctggaatgcgataagtgcggcagt
gaaatgcagctcaagaccggccgtttcggcaagttcttcggatgcaccaacccggagtgc
aagaacacccgcaagctgctgaagagcggtgacgcggcgccgccgaagatggatccggtg
aagatgcctgagctgaaatgcgaaaaggtcaacgacacctacatcttgcgcgacggtgcc
tccggtctgttcctggctgccagtcagttcccgaaaaaccgcgagactcgcgctccgctg
gtgatcgagattctgccgcacaaggacgagatcgatccgaagtaccacttcctgtgcgag
gctccgcaaaaggatcctgacggtctgccagcggtcatccgctacagccgcaagaccaag
gagcaatacgtccagaccgaagtcgatggcaaaccgacaggctggaaggcgtattacgac
ggtggcaagtggactgttgaagacaagcgcagcgcaaaggccaaggctgagtaa
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