Phytophthora infestans: PITG_00940
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Entry
PITG_00940 CDS
T01333
Name
(RefSeq) pre-mRNA polyadenylation factor, putative
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
pif
Phytophthora infestans
Pathway
pif03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pif00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PITG_00940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pif03019
]
PITG_00940
Messenger RNA biogenesis [BR:
pif03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
PITG_00940
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
9473032
NCBI-ProteinID:
XP_002909480
UniProt:
D0MS25
LinkDB
All DBs
AA seq
513 aa
AA seq
DB search
MEDEDFGEDVLVTTRGDGASIKEEAKTEESRATWEASEDSAVKTEKKDDDEDEDEELYGG
VSIKLNASATSQAEAAAEAAAAAANNPSAYKPSDNPAADSDDDEDDEDVAIVLSTDHGSK
PTLRFTGGGNRYVRGSFGGTQHGGTGAPGAGAITGSQPGDVGGSTVDGVDDMAMFGGRRT
AFDVDIDLLEDRPWRKPGVDISDYFNYGFDEHSWREYAGRQLRLRRDLAVEKSREQASRQ
AVNAANQQAMRDRDAKMQGRGAGGMPPRGFPGPMKQEGGDERSGEWGTGGNGMPPMGGAP
PRGGGFMGGPPPRGWHPGMGPPPGFMGQQNWNGPSMGGAPWGSGPGRGPPWMGGRGRGGG
RGGFDDRGRSGKDDRDDRRGGRSREASRDRSRSRDRSRREESRGSGRRDGGKDASEKDRG
RDRDRDDRRGRERDRGRERGREDSRDSGRDRDRGRPRERDGRGGSGSVEQDRASGRNRGD
RGGRSRSRDRDSRKRKGRDESSGSSRGPSKRRH
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaggacttcggcgaagatgtgctagtgacgacgcgtggggatggcgctagc
attaaggaagaggccaagacggaggagtccagagctacgtgggaagctagtgaggattcc
gcagttaaaactgagaagaaggatgacgatgaagacgaggacgaggagctctatggcggc
gtctccatcaagctcaacgcgtctgcgacgtcacaggctgaagctgcagcagaggccgct
gctgctgctgcgaataatccatctgcatacaaacccagtgacaatccggcggcggactca
gatgacgatgaggacgacgaagacgtggccatcgtgctgagcacagaccacggcagcaaa
cctacgctgcgcttcacaggtggtggcaatcgctacgtgcgtggcagctttggtggcacg
caacatggaggtactggagctccgggagctggagccataacgggctctcaacctggagat
gtgggcgggtccactgtggacggagtggacgatatggcgatgtttgggggacgacgcaca
gcatttgatgtggatattgacctgcttgaggacagaccttggcgcaaacctggtgtggat
atctccgattattttaattacgggtttgatgagcacagctggagagaatacgctggccgg
cagctgcgattgagacgcgatttggccgtggaaaagtcgagagaacaagcgtccagacag
gcggtgaatgcagctaatcaacaagccatgcgagatcgtgatgcgaagatgcaaggacga
ggggcaggcgggatgccaccgcgtgggttccctggaccgatgaagcaggaaggcggagac
gagcggtcaggagagtggggcactggtggcaatgggatgcctcccatgggcggtgctcca
cctcggggaggtggctttatgggcggccctcctccgcggggatggcatcctggaatgggt
ccaccgccgggctttatggggcagcagaactggaacggtccttcgatgggaggcgcaccg
tggggctcggggcccggtagaggcccaccttggatgggcggcagaggtcgcggaggtggc
cgtgggggctttgatgatcgcgggcgcagtggtaaagacgaccgtgatgatagacgcggt
ggtcgatccagagaagcaagtcgcgatcggtcgagatctcgtgatcgctctcgtcgcgag
gagtcaagaggaagcggtcgacgggatggtggaaaagacgctagcgagaaggaccgaggc
cgtgacagagaccgagatgatagacgtggacgcgaacgtgatcgaggccgtgaacgtggc
cgtgaggatagccgcgacagtggacgtgaccgtgatcgcgggcgtcctcgagagcgcgac
ggacgcggaggaagtggatcagtagagcaggacagagcgagtggacgcaaccggggagac
cgaggtggacgctctcgctctcgcgaccgtgattctcgcaagcgaaaggggcgagatgaa
agctctggcagcagccgaggtcccagcaagcggcggcattag
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