Phytophthora infestans: PITG_02564
Help
Entry
PITG_02564 CDS
T01333
Name
(RefSeq) exosome complex exonuclease RRP6-like protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
pif
Phytophthora infestans
Pathway
pif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PITG_02564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pif03019
]
PITG_02564
Messenger RNA biogenesis [BR:
pif03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
PITG_02564
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
KIAA2026_hel
HRDC
WHIM1
PMC2NT
WSD
Motif
Other DBs
NCBI-GeneID:
9470173
NCBI-ProteinID:
XP_002907480
UniProt:
D0MWN1
LinkDB
All DBs
AA seq
1465 aa
AA seq
DB search
MAEELDAAAFVSALYRKVLLSVKASNAIPSEDDGFHFHSQFSTEFATRSKRSGAKAKELV
QLLTKRRRADADAEHADSSDEDEDEVQELFDGPEPNARVTDYADMLLDEASKHLARFVSG
ESAASTEDSKLRPLENTPHVFEKNKKANKEEEVEKKVLRGAQDKPQDRFDEKIDNSDAPF
VSKLREKVHALINGAATVVADDEDDEMAPRNPYYPEIKGLKYAPWQLEASEEPYEMIGLD
KVSYLWVDSEENLMQMMKSLTAAEARVIAVDLEHHSYRSYMGLTCLMQISTAQEDFLVDT
LALRGKLQTLNQVFCDPEKVKVLHGSDMDILWLQRDLGLYIVNLFDTGRAARLLQYPRFS
LAYMLKRHCNIDADKQYQLADWRTRPLDKNMVKYAREDTRYLLFIYDRLKKELLQAGAKS
RESLLFQTLQNSSKLCLQVYEKPQPTEEDALAVGEKLKGTVYLRDLSALQKRVIVALYLW
RDRVARQEDESVAYVMPNHVLMKLTKHLPVRSDDLFRVCHPVPLLIRKHALQITKMIVAE
KTKLAAEETKTRPEPQPAVAARPTRKTWNEDGDEQSVTSIRKRVGRTEYAPWKSGQRKAG
VAAEASSSSNRPVALGANTTETVDESETAATLLEKVNAMVASTTFTIADSEAVETAVAKP
TSLLATPSKEEGESKPKMPQSISETYNMSSRSKRRKTTAVDTLSASEVKDRAQAFMQKVD
GDDEGEDESGFQGFDYAAASTKDDNQDQRGRRGGRGGRGNKRQAGYNPFVAMSGKGKKDP
NEPKAAQVKKMHHMPRSATFVVKRQFIRTDLLKNFSAILENKPSSGRDLSMTRSDTLKRV
SPTSFESDGGEGTAKKSKALVDVANAAAATVRKGPLKTEDMGQDSIEAGEDAQTSALSSK
TDLNREQEDGGKDVEMADVEASDTTEIKTDRNTAANKSSSKKLAKKRAKPAGKAASNGKT
ATKTKAKPKPKSKPKAKAKAAPKRKPRTQTDKMKENAPLASPLFVETGAEWNNTNIDFDE
LNTLRSMWELPAACHILWLLQSPLTLRFSNTLLEYEAALLRPEDSPVLEDVFTKLLLKKS
ERACLSAGIGLKYEWWNKQLRIYYLDMYNKWYALLRKAGERLPESFSQDEDDDDSSVSDS
RTDEQVDVELSDDEWLTLDILKARLETLGVVCPLKHQSFADLSIELRCKILLNLCEAVVD
DPANTEYMRQMEEDDLRVDPLGNDRAGNLYYFFPQFYEERRLYRLEPETRQWSLWAKGDD
ACRSMLKAIKDIRGRKIRGEQELLDHLEVIVEQIEDEDEARARQLEKANRLAILEAIPRK
RSLRLQVKQLEKMEKHQEELEHQKELSMEEIAEMRRDELLKKVEREAEKETRDAEREARR
LHREQVEREEAQAERERRRLRRIEKEQEDEKLEQLAEEERRKQEDARALRAQQRNADEEW
QQVDQEAGEAATTTRSEQVSASVEP
NT seq
4398 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggaactcgacgccgcagcgtttgtgagcgcgttgtatcgcaaggtgctgctc
tctgtgaaagcgtcgaacgcaattccatccgaagacgatggtttccacttccactcgcag
ttcagcaccgaatttgcgacacgctccaagcgctctggcgctaaggccaaggaactcgtg
cagctgctgaccaagcgccgacgcgctgatgcagacgcagagcatgcggacagcagtgac
gaggatgaagacgaggtgcaggaactgtttgacggaccagaacccaacgctcgtgttaca
gactacgctgatatgctgctggacgaggcttctaagcaccttgcgcgctttgtgagtggc
gagtcagcagcgtccaccgaggattccaagctccggccactggagaacacgccacatgtg
tttgaaaagaacaaaaaagccaataaggaggaggaagtagagaagaaagtgctgcgagga
gcacaagacaagccccaggacagattcgacgagaagatcgacaactcggacgcgccgttc
gtgtctaaacttcgtgaaaaggtgcatgcgctaattaatggcgctgctactgtagtggca
gatgatgaagatgacgagatggctccgcggaatccatactaccccgagatcaaggggctc
aagtatgctccatggcagttggaggcttctgaagagccgtacgagatgattgggctggac
aaggtgtcgtatctgtgggtagactcagaggagaacctgatgcagatgatgaagtctctg
acagctgctgaagctcgcgtcatcgcggtggatctggaacaccacagctacagatcgtac
atgggtctcacgtgtctcatgcagatttccacagcacaagaggactttttggtcgacaca
ttggcactccgtggcaagctgcagacactgaaccaggtcttctgtgaccctgagaaggtc
aaggtgctgcacggtagtgacatggatatcctctggctacaacgcgatctcggtctgtat
attgtcaacctcttcgacacgggacgtgcagcgcgtctgctacagtatccacgtttctcc
ttagcatacatgctcaagcgtcactgcaatatcgacgccgacaagcagtaccaacttgca
gactggcgtactcgtccgctcgataagaatatggtcaagtacgcgcgtgaagatacacgc
tacctgttgttcatctacgaccgacttaagaaggagctactacaagctggagccaagtct
cgcgagagtctactcttccagacacttcagaactccagtaaactgtgtctacaggtgtac
gagaagccccaaccgacagaggaagatgcgcttgcagtcggtgagaaactcaagggaaca
gtatacctccgtgatctctctgcgcttcagaagcgtgttatcgtggcgctttatctctgg
cgcgaccgcgttgctcgtcaggaagacgaatctgtggcttatgtgatgccaaaccacgtg
ctcatgaagctcaccaagcacctgccagtacgatccgatgaccttttccgtgtgtgtcat
ccagtgccactgcttatccgtaagcatgcgcttcagattacaaaaatgatcgtcgctgag
aagacaaagctggctgcggaagagaccaaaactcgtccagagcctcaacctgcagtcgca
gcaaggccaacaagaaagacgtggaacgaggatggagacgaacagtcagttacttcaatt
cggaagcgtgttggacgtacggagtatgctccttggaagagcggccagcgcaaggctggt
gtcgctgctgaagcttcatcgtccagcaatcgaccggttgctcttggcgctaacacaacg
gagactgtcgatgagtcagagactgcagccacgttgcttgaaaaggtgaacgctatggtt
gcgagtacaacgtttactatagctgatagtgaggcagtcgagacagcagtcgctaaaccg
acgtccttattggcgactccaagcaaggaagagggcgagagcaaaccgaagatgccgcag
tcgatatcagagacctataacatgtctagccgatccaagcggcggaaaactaccgcagtg
gacactttgtcggcctcggaagtcaaggaccgtgcgcaggcgtttatgcagaaggtcgat
ggagacgacgaaggtgaagacgagagcggcttccagggcttcgactacgctgcagccagt
acaaaggacgacaatcaagaccaacggggccgcagaggtggtcgcggaggccgaggcaac
aaaagacaggcagggtacaatccgttcgtggccatgagtggcaagggcaagaaggacccg
aacgagcctaaggccgcacaagtcaagaagatgcaccacatgcccagaagcgccaccttt
gtggtaaagagacagtttatccggacagatttactcaaaaattttagcgccattctggaa
aacaaaccaagcagcggacgcgatctctcgatgactcgtagcgacacgcttaagcgcgtc
tcgcccacgtcgttcgagtctgatggaggagaaggcaccgccaagaagtctaaggctttg
gtggatgttgcgaacgcggcggcggccacggtgcgtaagggaccgctcaagacagaggac
atgggtcaggactccatcgaggcaggggaagacgcccaaacgtccgctttatcgtccaaa
actgaccttaaccgcgagcaagaagacggggggaaagacgtggaaatggctgatgtcgag
gcctcagacacgactgagatcaagacagaccgtaatactgccgcaaacaagtcgtcatct
aagaagctagccaaaaagcgtgcaaaacctgctggcaaagctgctagtaacgggaagaca
gcgacgaagactaaagcgaagccgaagccgaagtcgaaaccgaaggctaaagccaaagca
gcgccaaaacggaagccacggactcagacggataaaatgaaagagaacgcgccacttgct
tcgcctttgttcgtggaaacgggagcagaatggaacaacacaaacatcgactttgacgaa
ttgaacacgctgcggtcgatgtgggaactgcctgctgcttgtcacattctgtggctattg
cagagtccgctgacgcttcggttctccaatacattgctggagtatgaggcagcattgctg
agaccagaggacagtcccgtgctggaggacgttttcacgaaacttttgctaaagaaaagt
gaacgagcgtgtttaagtgctggaattggccttaagtacgagtggtggaataagcaactg
cggatttactacctggacatgtacaacaagtggtacgcactgctacgcaaggctggcgag
cgtctaccggaatcgttttcccaagatgaagacgatgatgatagcagcgtctccgacagc
aggacggacgaacaggtggacgtggaactctctgacgacgagtggctgacgctcgacatc
ctaaaggcgcgtcttgaaactcttggtgtcgtctgtcctctgaagcatcagtcatttgcg
gacttgtcgattgagttgcgatgcaaaatcctactcaacttgtgcgaggccgtggtggac
gacccggctaacactgaatatatgcgtcagatggaagaggacgatctacgcgtggacccg
ctgggcaatgatcgtgctgggaacttgtattatttcttcccacagttctacgaggagcgg
cggctgtacagattggaaccggagacaagacagtggtcgctgtgggcaaagggggatgac
gcgtgtcgctctatgctcaaagcgataaaagacattcgtggacgtaaaatccgcggcgag
caagagcttctggatcatctggaagttatagtagagcagatcgaggacgaggacgaagct
cgtgcgcggcagctggagaaagctaatcggctggcgattctcgaggcgattccgcgtaaa
cgttcgctgcgtctgcaagtaaagcagttggagaagatggaaaaacatcaagaagagctg
gagcatcagaaggaattgtccatggaggaaattgcagaaatgagacgtgatgagttgctg
aaaaaggtcgagcgcgaagctgagaaggagacacgcgacgctgagcgcgaggcccgacgc
ttgcaccgtgaacaggtagaacgagaggaggcacaagctgagcgagagagacgtcggctg
cgtcgaatcgagaaggagcaagaggacgagaaactcgagcaactagctgaagaagagcga
agaaaacaagaggacgcgcgtgcgcttcgtgctcaacagcggaatgcagacgaggaatgg
cagcaagtagaccaggaggcaggggaagcagctacaacaacaagaagcgagcaggtttcg
gcttcagtggagccttaa
DBGET
integrated database retrieval system
