Phytophthora infestans: PITG_03206
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Entry
PITG_03206 CDS
T01333
Name
(RefSeq) hypothetical protein
KO
K12600
superkiller protein 3
Organism
pif
Phytophthora infestans
Pathway
pif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PITG_03206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pif03019
]
PITG_03206
Messenger RNA biogenesis [BR:
pif03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
PITG_03206
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_17
TPR_8
TPR_16
TPR_CcmH_CycH
TPR_1
TPR_12
TPR_11
TPR_7
Motif
Other DBs
NCBI-GeneID:
9464612
NCBI-ProteinID:
XP_002906288
UniProt:
D0MZM6
LinkDB
All DBs
AA seq
1539 aa
AA seq
DB search
MLLDAAAALKAERFQEAQDAGRRVTQFDPNNFQAFMCVGLASFQLQEWEDCEEAYRRAAD
LKPDMPAPWKYLVDLFEAKKDAKSKLEPLQKLVDLNLRGKKLKKCQKWVVELAATAMELK
MLPKAFDSGTPLVGEQSGDSGQLSLEKTPNDELPTALTIWLDLVDLLQRPGFSLSECSGS
YSMADISSHFFTAASRTDWTTQNKEIDALRPRMDVAIAFFMRFHLDFLKTSKKKPALLKT
LDALAMSIVEWFPESKIPAEFLLLRSEDQDTPIGLEKAKKIAVRLSASHPKSPMALVFRA
IECLHVGDNSQVKNFVEALAGYSSSSFQECALCIRVQIELASIALAARDVDGCLNRLALA
RKVVADKSTMLGSEGPTPALYSEVKVQFMTATAREYSADIDKALEHYRRVMENDDIIFTA
RAAVAAAELLAGKTRAEEALDIIDCVSSSDVEDEQMSAVVLCTRGWLQFQLGDLQQAQAL
LETNASKISSSDASARGRALKRLAIVYWHLGGSHQTAKTGCFGHLLQAAKLTPSDAEIFS
WLGKWYLEVAKDVLRAEKCFLKALSLSLTDKLAGMALSDLYDQQGKYETNVKLWERVTED
QETAPTWALLRLAQHLVEKNDETAVGKMHLVLRNDPMNARYWVILAHVYQNFDKQVSAQR
SYLKAIELGEESWCVRCELARIEGLLLLFDDALERINPVITGEMADSEPDVTVASMVYSD
LLFQQAKYLCAEGLYGNAAANLKEASRMMKGLPSTSPLSGSVEACKLIGDIHCFAYYLSP
NDFSSDGSSWVEFISAGRKAYEAAVLLAGKSVNEAPGVSGAIAAERYYDVGLSYWYEAQA
LSSVGSIPSSAFSGETGLDADSSIVALKAKASMNFKLALQEGPACSLAWNGLALVSDNLL
VKQFAWTRSIQTGTSSDATWANLGMFYLTLADTVSSTASLAQKSFLQLQSMNPSNPSIWN
GYAMLARRQASSTVQQKKAIEAFDCALETGLDLDALLGLSMALLDFGVSVGESVTQAPEH
GNEVVMFCLKKYLERDPFNGRAWHALGVAQHRLGLYTEALASYTRAASSTQATDGLEWNR
LVTQLGELSSTPQCTTTEELALLQKIAAQIDSSSSETSALRVIVQAQLLYRQSKGGEALD
QLQALLEQDDSQSIQSEVVALVGLSMASLSMDEFTPQAAGLAEACKKRLLLSIDDAESPL
TTRDYLNLRLVELHERCVGAEDAYLTRLQALSQTSDGANSCTLGMRLALATIDSESLQVS
SCLTEYLRSSARNAGPTDTNRLCVDAQKLIRAQPWNPHAYILAGTSVLKRVSLREKQASH
DQVLRQLLRLLQHGLALAVGKDYDTAQLELLMSYCHVKLGEQDEAIASSEKALSRVEAGK
KSGAFVSSVDMDLLKARLLSISSPTKAIDKYLGVIATVAATSSGRLIPILLELGGLYEQY
HHLDAAINLWKLVASLTATKSVSCTDGDDNMSSTTTALSSNSDTAACFLANLRLALIHGR
KNNVKPACKHIKVALSLAQAGADSSSSTVAAFVENVLTN
NT seq
4620 nt
NT seq
+upstream
nt +downstream
nt
atgctgctggacgcggcggcggcgctcaaggccgaacgcttccaggaggcacaggatgct
ggtcgtcgagtgacgcagtttgaccctaacaacttccaggccttcatgtgcgtaggactg
gctagcttccagctgcaggagtgggaagactgcgaggaggcgtatcgtcgcgctgcagat
ctcaagccggacatgcctgcgccgtggaagtatcttgtggacctgtttgaggcgaagaag
gacgccaagagcaaattggagccgcttcagaaacttgtggacctaaatttgagaggcaag
aagttgaagaaatgccagaaatgggtcgtagagctggcagcaacagcaatggagttgaaa
atgctccccaaggccttcgactctggtactccacttgtgggggagcaatctggagattcg
ggtcagctctccttggagaagaccccaaacgacgaactaccaactgcactgacaatctgg
ttggatttggtggatctgctacagcgtcctggcttcagtctatcagaatgctctggcagc
tactccatggcagacatctcgagtcacttctttactgctgcttctcgtaccgactggaca
acccagaacaaagaaatcgacgcacttcgacctcgaatggacgtcgcgattgcattcttc
atgcgcttccacctggatttcttgaaaacttcaaaaaagaagcctgctcttctgaaaacg
ctggatgcgttggccatgtcgatcgtggagtggtttcccgaatccaagatcccagcggaa
ttcttacttctccgctctgaagaccaggacactccaattgggctggaaaaggccaagaag
attgctgttcgactgtctgcgagtcacccgaagagtcctatggctcttgtgttccgagcg
atcgagtgtttgcacgtgggggacaacagccaggtgaaaaattttgttgaagcactcgca
ggttactcctcttcatcctttcaagagtgcgctctttgcattcgcgttcaaatcgaactg
gcgtcgattgcgctggctgctcgcgacgttgatggctgtctgaatcgtttagcattggca
agaaaggtagtggctgacaagtcaacgatgcttgggtcagaaggcccaactcctgctcta
tattcggaagttaaggtgcaattcatgacagcaaccgcacgtgaatattctgctgatata
gataaagctctggagcactaccgcagggtcatggaaaacgacgatattatcttcacggct
agggcagcagttgcagcagcggagcttttggcaggaaagacaagagcggaggaggccctc
gacatcatcgactgtgtctcgtcgtctgacgtggaggatgagcaaatgagtgctgttgta
ctctgcacgcgcgggtggctgcagttccagcttggtgatctccagcaggctcaagcattg
ctagagacaaatgcgagcaagatctcctcctctgatgcttctgctagaggtcgagcactc
aagcgattggcaattgtatactggcatcttggaggctctcaccaaactgccaagacggga
tgttttggccatctactgcaagcagccaagttgacgccatctgacgcagagatcttttcc
tggttgggaaaatggtacctggaagtcgcaaaggatgttctgcgtgctgaaaagtgcttc
ttgaaggcgctatcgctgtctctcaccgacaagctagcaggtatggctctgagcgacctg
tacgatcagcaggggaagtacgaaacaaacgtcaaattgtgggagcgtgtgacagaggat
caagagactgcccccacctgggcacttctgcgactggcgcagcatctagtagagaaaaac
gacgagacagcagtggggaaaatgcatctggtcctgcgcaatgaccctatgaatgctcgt
tactgggttattctggcgcatgtttaccaaaacttcgacaagcaagtgtccgcgcagaga
tcatatctgaaggctattgagctgggtgaagaaagttggtgcgttcgctgtgagctggct
cgtatcgaaggattattgctgctctttgatgatgctctggagcgtatcaaccctgttatt
accggcgagatggcggatagtgaaccagacgttacggtggcttccatggtttactctgac
ttgctgttccaacaagctaagtacttgtgtgccgaggggttgtacggcaatgctgctgct
aatctgaaggaggcatcacggatgatgaagggactgccgtccacctctcctctttcaggg
tccgtggaagcgtgcaagttgatcggtgatattcattgctttgcttactacttgtcgccg
aacgatttttcaagtgatgggtccagctgggtagagtttatcagcgcgggacggaaggcg
tatgaggccgccgtcctacttgccggcaagagcgtaaatgaggcccctggcgtttctggc
gcaatcgctgctgaaagatactacgatgtcggtctgagttactggtacgaagcacaggct
ctaagcagtgtgggcagtattcctagttcagctttctcaggtgagacaggactcgatgca
gactcttctatcgtagcactgaaggcgaaggcgtcaatgaatttcaagctggctcttcaa
gagggtcctgcatgctcgttggcctggaacgggttggctctagtgtctgacaatctgctg
gtgaagcaatttgcttggacacgatccattcaaactggcactagcagcgacgccacctgg
gccaatctgggtatgttctacctcactctggctgatactgtgtcctcaacggcgtccttg
gcacaaaagtcgtttctccaactgcagagcatgaacccaagcaatccgtccatatggaat
gggtatgcaatgttggctcgacgacaagctagctcaacagttcagcagaaaaaagcgatc
gaagccttcgactgcgcgttggagaccgggttggatctggatgctttgcttggtttgagt
atggcattacttgatttcggagtaagtgttggtgaatcagtcactcaagccccagagcac
ggtaatgaggtggtgatgttctgtctaaaaaagtacctggagcgggatcctttcaacgga
cgcgcttggcacgccctcggtgtcgctcagcatcgacttggattgtacaccgaggctttg
gcatcgtacacccgcgcagcttcgtcaacgcaggctactgatggacttgaatggaacagg
ttggtgacacagcttggcgagctctccagtacaccccagtgcactaccacggaagaatta
gcactcttgcagaaaattgccgcacaaatagactcatcgtcaagtgagacctcagcactg
cgggttatcgtgcaagcgcagctactataccgccagtcgaagggaggtgaggcgttggat
caacttcaggcgctgctggagcaagacgactcccagtccatccaaagtgaagtggttgct
ctagtgggcctctcgatggcgagcttgtcgatggacgagtttacgcctcaggccgctggt
ctagctgaggcatgtaagaaacgtctccttctatcaattgatgacgcggagtcacctctt
accacacgtgactacctgaacttgcgtctggttgagcttcatgaacgatgcgtgggcgcc
gaagacgcctatttgacccgcttgcaggcactctcacaaactagcgatggcgccaactct
tgtactctggggatgcgactggcccttgcaacgattgattctgaaagccttcaggtgtca
agttgccttacggaatacttgcgctcaagtgccagaaatgctggtccaaccgatacgaac
aggttgtgcgtggatgctcaaaagctgatccgtgctcaaccctggaaccctcacgcttac
attctggctggaacgagcgtcctgaagcgcgtgagtctaagggagaagcaagcatcacac
gaccaagttcttcgccaactgttgcgcttgttgcagcatggattggctcttgctgttgga
aaagattatgacacagctcaactagagttgctgatgagctattgccacgttaagcttggt
gagcaggacgaggcaattgcatcctcggaaaaagcgttgagccgggtggaagcaggcaag
aaaagtggcgccttcgtgtcgtcagtggacatggatttgttgaaagctcgtttgctctcg
atctcaagtccaacgaaggctatcgataagtatttgggtgtgattgccactgtcgctgcg
acgtcttcggggcgattgattccgatcctccttgagcttggcgggctgtacgaacaatac
caccatttggatgctgctattaatctgtggaagcttgtggcctcgttaacggcgaccaag
tctgttagttgcaccgatggcgatgacaacatgagcagtactacaactgccttgagcagc
aacagcgatacggcggcgtgtttcttggctaatttgcgactggcgcttattcacggcaga
aaaaacaacgtgaagccggcttgcaagcacattaaggtcgcactatcgctcgcccaagct
ggagcagactcgagctcatcaactgtcgctgcgttcgtggagaacgttctcacgaactag
DBGET
integrated database retrieval system
