Phytophthora infestans: PITG_03568
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Entry
PITG_03568 CDS
T01333
Name
(RefSeq) DEAD/DEAH box RNA helicase, putative
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pif
Phytophthora infestans
Pathway
pif03013
Nucleocytoplasmic transport
pif03015
mRNA surveillance pathway
pif03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pif00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PITG_03568
09122 Translation
03013 Nucleocytoplasmic transport
PITG_03568
03015 mRNA surveillance pathway
PITG_03568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pif03019
]
PITG_03568
03041 Spliceosome [BR:
pif03041
]
PITG_03568
Enzymes [BR:
pif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PITG_03568
Messenger RNA biogenesis [BR:
pif03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PITG_03568
Spliceosome [BR:
pif03041
]
Complex C
Other components
EJC/TREX
PITG_03568
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PITG_03568
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
9467523
NCBI-ProteinID:
XP_002906628
UniProt:
D0MXY1
LinkDB
All DBs
AA seq
455 aa
AA seq
DB search
MPGEENKEFDDELVDYEEEEETTTDASKAAAEGKDAKKERRLGRRRRFLARLPACGGPLE
RPTMPGHYVGIHSSGFRDFILKPECLRAVVDCGFEHPSEVQHECIPQAVLGMDIICQAKS
GMGKTAVFVLATLHQIEPVDGQISVVVMCHTRELAFQIAHEYERFSKYLVDVKTGVFYGG
VPISQNREALKNNPPHILVGTPGRILGLLREKTLKLDKVKHFVMDECDKMLEAIDMRRDI
QEIFKATPHDKQVMMFSATLSKEIRPVCRKFCQDPMEIYVDDETKLTLHGLQQYYIKLEE
SEKNRKLNDLLDALEFNQVVIFVSKKNRGRELNRLLNECNFPSICITADLSQEERIKRYK
SFKDFQKRILVTTDLFGRGMDIERVNIVVNYDFPNDSDQYLHRVGRAGRFGTKGLSISFI
SSEEDTEMLAKVQSRFEVNIPELPDQIDISTYMST
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgccgggcgaggagaacaaggagttcgacgacgaattggtcgactacgaggaggaagag
gagacgacgacggatgcctccaaggccgccgctgaaggcaaagacgccaagaaagagcga
cgcctagggagaagacggcgctttctcgctcgcctgcctgcgtgcggaggacctcttgag
aggccgactatgccgggccattacgtcggaatccacagttccggtttccgtgactttatt
ttgaagcctgagtgcctgcgcgccgtcgtggactgcggttttgagcacccttcggaagtc
cagcacgagtgcatcccccaggccgtgctcggcatggacatcatttgccaggccaagtcg
ggtatgggcaagactgctgtcttcgtgcttgctactctgcaccagatcgagcctgtcgac
ggccagatcagcgtcgtggtcatgtgccacacccgtgaactggcattccagatcgcccac
gagtacgagcgattcagcaagtacctggtggacgtcaagaccggcgtattctacggcggt
gtgcctatttcgcagaaccgcgaggctctgaagaacaacccgccccacatccttgtgggc
actcccggtcgtatcctcggtctgcttcgtgagaagaccctgaagctggacaaggtgaaa
cactttgtcatggacgaatgtgacaagatgcttgaggccatcgacatgcgtcgcgacatc
caggagatcttcaaggccacccctcacgacaagcaggtgatgatgttctcggctaccctg
agcaaggagatccgccctgtgtgccgcaagttctgtcaggacccgatggagatctacgtt
gacgacgagacgaagttgacgcttcacggcctgcagcagtactacatcaagctcgaggag
tcggagaagaatcgcaagctgaacgacctgctggatgcgcttgagtttaaccaggtagtg
atcttcgtatccaagaagaaccgtggacgcgagctcaaccgcctgctgaacgagtgcaac
ttcccgtcgatctgtatcacggctgacctatctcaggaggaacgtatcaagcgctacaag
agcttcaaggacttccagaagcgtatcctggtaactacggacttgtttggtcgtggtatg
gatatcgagcgtgtcaacatcgtcgtgaactacgacttcccgaacgacagcgaccagtac
ctccaccgtgtgggccgtgccggtcgtttcggtaccaagggtctgtcgattagtttcatc
tcgtcggaggaggacacggagatgctggccaaggtgcagtcgcgtttcgaggtaaacatc
ccggagcttcccgaccaaatcgatatctccacgtacatgagcacttag
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