Phytophthora infestans: PITG_03987
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Entry
PITG_03987 CDS
T01333
Name
(RefSeq) DEAD/DEAH box RNA helicase, putative
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pif
Phytophthora infestans
Pathway
pif03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pif00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PITG_03987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pif03041
]
PITG_03987
Enzymes [BR:
pif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PITG_03987
Spliceosome [BR:
pif03041
]
Complex A
U2 snRNP components
U2 related factors
PITG_03987
Complex B
PITG_03987
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
FYVE
KH_12
FIST
FIST_C
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
9467919
NCBI-ProteinID:
XP_002907014
UniProt:
D0MZ17
LinkDB
All DBs
AA seq
2091 aa
AA seq
DB search
MNQGAGPPAAATNNATAAPDPANEVAAAAANAADWSDSADNSNSQEDESIPPPQGPSLSY
ERKIRLHKYAENRARSCLGLLSDTSSALWKVHDCKNDIGVYKPSSDWSESVSAKAVVFAN
AAFPNVLKTIYDLKTSDKFKLFMRKVLGDMFLDAEVLEDLNGTGVYPSANPPRDAREMYK
QAAIKWWAIKSGSLASKSSDFYVLEYIGIETSGGDIVACYLFQESLAEVGGMPHIQGNNL
ERSQFDALICKFERTSSPDYKDDFVTISIAFQRPPPMVSLFRSNPAVEMVTQLARGLRDL
LEDPPELQEISVVKTSAWVKDKERRFCVLCNKRFSPIFRRRHHCRTCGEVICWACSSTIR
VPSISFTHNDTGKQVLSRHQPSIRVCSKCVVSHHRSKSGRELSNQEDFKDWIQRSTEQQQ
LAVGAETGHYAAPSPAPVPSQLHKHLLRSDWKTLDDSNSAVVHSATATAEQACNVASKHY
AVVYVDRHSEVSIERATGHGRDNPLSIAKAAPKKNPDRSRSSSAGRRAPVANPVKQTAPP
THDNQEETERRSNSMERLPVQNNTSYVHAASAWATNKTEALAMTGAFQELMTKLGGDVHF
VVVGFSTGFNAEVIVNLLRQLAPGVPYIGGTIARGMCDENAWVSVNRHNDEGLVTLWGVN
DPHGIYSVVHAEYSQSDAHEKTYAAAKTAFARVAGDVDAGEKPAFIAAYACPLFVEHAID
GIREAIHCPIIGGCSSDATRHGEGEVSVSWIQISSSSSSDYTKSVRDGRGDWTEMGIAFA
LCFPSVETYVSWFSGYSPVGVNSEYCMGTVTKASNKTIYEIDCKPAAEVYQEWLDVASDK
SQTELSSIGFPRLGSLHPLGTTIDFVSNQMEIDRSIDANSSSSLCSMQSSDWSKLINMTA
VITGINEDGSLSTTSSVASGTNVVLMETSAQSLKTAINKMGAQAVESNKFYIHETIGCLM
FLSAGVQALLGHKSMAEMMAQDAASPRRHRRRRSKSRSSRRHSSSSRRKRSRSRSLSSHS
ASSGASRSSSRSRERRRSSKSGDRHRRKRSKTERRERRRSPSRSRSRSRSESRRSSSKKK
RDRSHRGGRKSSSRRSRSRSETRAEASRRKRSESKEEIKNDEKRKANGHVEHAKPQEKSS
GSSSEKKRVATDPPVVTAPVAGATLKKFKFGGISLKPGNAKNVVKKKPAVLFSALSEDTN
PPPNGEKDPSKKHKLLLEEQKEEEKAKFLAEEDAVPKQLDLHTEEDEEKGETAEERKKRE
QEEARQRERVQKVVEEVDPLDAYMAGLVDESARANPAANVISQSEIEAKGKINIYGTFLP
PEAADQAGAVVSTPSAATQTTTNVDKETPEEREAREERELKEFMRAIKEKREQETKASSN
TTAASNGADPEDPLVKKKDTGRIYQGFEEDIIGEDSELMDQRSALEILQDQQKKKEIKPV
DHSKMNYISFQKKFYVVPKEIKDLSDEEVEAQRKVAEMKVRGKNCPRPLQKWTQCGFSVR
MLQLIKKHGYEEPFAIQKQALPAIMSGRDVIGIAKTGSGKTLAFLLPMFRHVLAQPPLQE
NEGPIGIIMAPARELAQQIYVEARKFSKGLGLRATAVYGGSSVSEQIANLKRGSDIVICT
PGRMIDILCMSAGKMVSLQRVTYVVLDEADRMFDMGFEPQITKIMMNIRPDRQTLLFSAT
FPRSVESLARKVLKKPVEITVGTRSTASGDITQYVEVREEDDKFMRLLQLLGLWYEKGNI
LVFVNKQQACDQIFQDLMKAGYPALSLHGGKDQVDRDYTIDDFKRKVRTVMVATSVAGRG
LDVKDLVLVINYHCPNHMEDYVHRVGRTGRAGRKGTAYTFISPDEEEYSVDLVKALENAK
QTIPPELTALAEGFTAKVKRGEARYHGSGFKGKGFTFDETERNETQRTADLQRRQYELDQ
GILVEDSGAVDDDDMEEPSKENIASTSTTEKQFAPAGQKTMPIDSGAMSAFIKAQKIIQN
LDLKYRGTGSGENHFVEELEINDYPQQARWRVTQKEASDSVAELTGAAVIARGSYIPAGR
KPNPSERKLHLAIEGPTQASVIDARRELQRILDETTMQVGLGGDKYGKYSL
NT seq
6276 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaaggcgctgggccgccagcagcggcaacaaataatgcgactgcagcccccgac
cccgcaaatgaggtggccgctgcggcagccaacgcggcggactggagcgactcggccgac
aactcgaactcgcaggaagacgaaagtattccgccgccacagggaccgtcactctcgtac
gagcgcaagatccgtctgcataaatacgctgaaaaccgtgctcgctcgtgcctcggcttg
ctgtccgacacgagcagcgcgctctggaaggtgcacgactgcaagaacgacatcggcgtg
tacaagcccagctcggattggtccgagtcagtctcagccaaggctgttgtgttcgcaaac
gcggccttcccgaatgtactaaagacgatctacgatctgaaaacatccgacaagttcaag
ctcttcatgcgcaaagtgttgggcgacatgttcctagatgcagaagtgctcgaagatctc
aatggcactggagtctatccgagtgccaacccacctcgagacgctcgtgaaatgtacaag
caggccgccattaagtggtgggccatcaagtcaggctccctggcaagtaagtcttccgac
ttttacgtgttggagtatattggcatcgagacatccggtggagatatcgtggcatgctat
ctcttccaggaatcgctggcggaggtgggcgggatgcctcacatccaggggaacaatctg
gagcgctcgcaatttgatgctcttatctgcaagttcgagcgcacgtcgtcgccagattac
aaggatgattttgtcacgatttctatcgctttccagcggcctccacctatggtcagcttg
ttccgcagcaatcctgctgtcgaaatggtcacgcagcttgcgcgcggactacgtgacttg
ctcgaggatcctcctgagcttcaagaaatatcggtcgtcaagacttctgcttgggtgaaa
gacaaagaacgccgcttctgcgtgctgtgtaacaagcgcttttcgccgatcttccgtcgt
cgtcatcactgccggacttgcggcgaagtgatctgctgggcgtgtagtagtactatccgc
gtgccttcgattagcttcacgcacaatgatacaggtaagcaggttctatcgcgtcaccaa
ccgagtatccgtgtgtgcagtaaatgtgtggtgtcccatcatcggtcaaagagcggcagg
gagctgagtaaccaggaggatttcaaggattggattcaacgcagcactgagcagcagcaa
cttgctgtcggtgctgagacaggacactacgcagcaccttcgcctgcaccagtgccttcg
cagcttcacaagcacctactcaggagcgactggaaaaccctcgatgatagcaacagtgca
gttgtccacagcgccacagctacggctgagcaggcatgcaacgtggcgtccaagcactat
gcagtcgtgtacgtcgatcgacactcggaagtcagtattgaacgcgcaaccggtcatggt
cgagataacccactgagcatcgccaaggcagctcccaagaaaaaccctgatagaagtcgc
tcgtccagtgctggtcgtcgtgctccagtagcaaaccctgtgaagcaaacggccccacca
actcatgataaccaggaagaaacagagcggcgttccaactcgatggagagactcccggtg
cagaacaatactagttacgtccatgcagcttcggcgtgggcaacaaacaagacagaagct
ctcgctatgactggagcctttcaagaactgatgacaaagctcggaggtgatgtccatttt
gtagttgttggcttctcaactggcttcaacgccgaagtgattgtgaaccttttgcgccag
ctagctccaggagttccctatattggcggcacgatcgctcgtgggatgtgtgacgaaaat
gcttgggtgtctgtgaacagacataacgatgaaggcctcgttactttgtggggagtaaat
gatccgcatgggatttactccgtagtccacgcagagtattcgcagagtgatgcccatgag
aagacatacgctgcagctaagactgcctttgcccgcgtggcaggtgatgttgatgccggt
gaaaaaccagcgttcattgctgcgtacgcttgtcctctgtttgtagagcatgctattgac
ggtatccgcgaggcgattcactgtccaattattggaggctgctcttcagacgctacgaga
catggtgagggtgaagtatcagtgtcctggatccagatcagcagtagcagcagttctgat
tacacgaaaagtgtccgggacggacgaggtgactggactgaaatgggcatcgcgtttgcg
ctctgcttccccagcgtggagacgtatgtgagctggtttagtggctacagtccggttgga
gttaatagcgagtactgcatgggcacggtgacgaaggcgtcaaacaagaccatctacgaa
attgactgcaaacctgcggccgaagtctaccaagagtggctcgacgtggcatcagacaag
agtcaaactgagctctcgtcgatcgggtttcctcgactcggtagtctgcaccctttaggt
accaccatcgacttcgtctcaaatcaaatggagatagaccgtagcatcgacgcgaactct
tcttcttcgctgtgctccatgcaatcaagcgactggtccaaactcatcaacatgaccgcg
gtgattactggaatcaatgaggacggatcgcttagtacgacgagttcagttgcgtccggt
accaacgttgtgctcatggagacatctgcgcagtcattgaaaactgcaatcaacaagatg
ggagcgcaagccgtggaaagcaacaagttctacattcacgagacgatcggttgtctgatg
ttcttgtcggccggagtccaagctctgctgggccacaagagcatggctgagatgatggcg
caagacgccgcgagtccccgtcgccatcggcggcggcgcagtaaaagtcgctcatcgcgt
cgccactcgtcatcatctcgtcgcaaacgctcgcgctcgcgctcgctgtcgtcgcatagt
gcgtcgagcggcgcgtctcgctccagttcgcgatctcgggagcgacgccgctcgtccaaa
tctggcgacagacaccgccgcaaacgctccaagacggagcggagggaacgacgtcgttcg
ccttcacgctcgcgctctagaagtcgctcagagagcagacgtagtagctccaagaagaag
agagacagaagccacaggggcggacgcaagagtagcagcagacgcagtagaagcaggagc
gagacgagagctgaagcttcgagacgaaagcgatcggagtctaaggaggagattaagaac
gatgagaagcgtaaggccaatggccacgttgagcacgcgaaaccacaagagaagagtagt
ggctctagctctgagaagaagagagtagctacagatccccctgtcgtcactgcaccagta
gctggtgcgacgttgaagaaatttaagtttggcggcatttcgctaaagcctggcaacgcg
aagaacgtggtgaagaagaagcctgcagttttatttagcgcactgagtgaagataccaac
ccgccacctaatggcgagaaagatcctagtaagaaacataaacttcttcttgaagagcag
aaagaagaagagaaagccaagttccttgcagaagaagatgctgtgcccaagcaactggat
ttacacacagaagaagatgaagagaagggtgaaacagcagaagaacgtaaaaagcgagag
caagaggaagccaggcaacgcgaacgggtgcagaaagtggtggaggaagtggatcctctg
gacgcctatatggctggactggtggacgaatcagcgcgtgctaaccctgcagctaacgtg
atctcgcagtcggaaatcgaagccaagggcaaaatcaatatttatggcacattcttgccg
cctgaagctgcagatcaggcgggtgcagtcgtgtcgacaccctctgctgctactcaaacg
acgactaatgttgacaaggagacgccagaagaacgtgaagcccgtgaagagcgtgaactg
aaggagtttatgcgtgcaattaaagagaaacgcgaacaagagaccaaggcttctagtaat
acaacagctgcaagcaatggagcagatcctgaagatccgttggtaaagaaaaaagatacg
gggcgtatctaccaagggtttgaagaagacattatcggcgaagactccgagctgatggat
cagcgttcagctctcgagattcttcaggatcagcagaagaagaaggagatcaagcctgtg
gatcactccaagatgaactatatttcgttccaaaagaagttttacgtggtgcctaaggaa
atcaaggatctgtcggatgaagaggtggaagcacaacggaaggtggctgagatgaaggtt
cgaggaaagaattgcccgcgtccgttgcagaaatggacccaatgtggcttcagcgtccgc
atgctccagctgatcaaaaaacacggctacgaggagccgtttgctatccagaagcaagcg
ctacctgctattatgtctggacgtgatgtcattggcattgcgaaaacaggttcaggcaag
acgttggcgttcctgctccccatgttccgtcacgttcttgctcaacctcccctccaagaa
aacgaaggccccattggaatcatcatggcacctgcgcgagaacttgctcagcagatttac
gtggaggctcgtaagttctcgaagggtcttggactgcgcgctactgctgtgtacggagga
tcgtcagtctcggagcaaattgcgaacctgaaacgcggctcagatatcgttatctgcacg
ccagggcgaatgatcgatatcctgtgcatgagtgctggaaagatggtgtcactgcagcgt
gtgacgtatgtggtgctagatgaagctgatcgtatgttcgacatgggcttcgaaccgcag
atcacgaagattatgatgaacattcgcccagaccgacagacgctgctcttctcagcaact
ttccctcgctctgtggaatccttggcccggaaagtactgaagaagccggtggagatcact
gtgggtacacgtagtacggcatcaggcgatattacgcagtatgtagaagtccgcgaagaa
gatgacaagtttatgcggctcctgcaacttctgggtctttggtacgagaagggaaatatc
ctagtgttcgtgaacaaacagcaagcttgcgaccagatattccaagacttgatgaaggct
ggatatcctgcgctctcgctgcacggtggcaaagatcaggtggatcgggactatacaatc
gatgacttcaaacgcaaggtgcgaaccgtgatggtggcgacttctgtcgccggtcgaggt
cttgacgtgaaggatttggttcttgttatcaattaccactgtcccaaccatatggaagac
tacgtccaccgcgttggacgaaccggacgagctggtcgaaagggtacagcctacacgttc
atctctccagatgaggaggagtactcggtggatcttgtcaaagcattggagaacgcaaag
caaactattcctcctgaactgaccgcacttgcagaaggcttcacggcaaaggtcaagcgc
ggtgaggcgaggtatcacggcagtgggtttaaaggcaaaggctttacattcgacgagaca
gaaaggaacgagacccagcgcacagcagacctgcagaggcgtcaatatgaattggaccag
ggcattttggttgaggattctggtgcagtcgatgacgatgatatggaagagccaagcaag
gagaatattgctagcactagcacgactgaaaagcagtttgcgcccgctggtcagaagacg
atgcctatcgacagtggagcgatgtctgctttcatcaaggcacagaaaatcatccagaat
ctggatttaaagtacaggggaaccggttctggagagaaccactttgtcgaagagctcgaa
atcaacgactatcctcaacaggctcgatggcgagttacccagaaggaggcaagcgactcg
gtcgcagaactcactggtgctgctgttatcgcgagagggtcgtatattcctgctggccgg
aagcccaatccatcggaacgcaagcttcacttggctatcgagggcccgactcaagcttcg
gttatcgacgccaggcgagaactgcaacgcatcttggacgaaaccacgatgcaggtcggt
ctgggcggcgacaaatacggaaagtacagtctgtag
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integrated database retrieval system