Phytophthora infestans: PITG_06390
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Entry
PITG_06390 CDS
T01333
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pif
Phytophthora infestans
Pathway
pif03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pif00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PITG_06390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pif03021
]
PITG_06390
03019 Messenger RNA biogenesis [BR:
pif03019
]
PITG_06390
Transcription machinery [BR:
pif03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PITG_06390
Messenger RNA biogenesis [BR:
pif03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
PITG_06390
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pfc11_Clp1_ID
zf-BED
BING4CT
Motif
Other DBs
NCBI-GeneID:
9471540
NCBI-ProteinID:
XP_002998520
UniProt:
D0N4R5
LinkDB
All DBs
AA seq
628 aa
AA seq
DB search
MSALVCLAPKTPAITAVEAIGPLGPINWSSPSFCSSARTEGGKRIVERAVAERRVTFLEP
TSTICGDVPSRLTQEASQTTQVPASSPLARTPLPVHAASRPMAMAQLASSTPSGGASSGP
TSTHKTEIQTLLGQFDAQINSMMDYPAKDTINALTMLAERSQLAPEIVSFLETKIHRVAP
NCKLPIFYLTDSILKNVRGPYVALFAAKIVPLYCNCVRQVSGKDLKRFIHVLNTWETTRL
FNADAIAQMRSAANRAMQQADPSTRSVPASINQEKSTQQSRAKLAQQQQDMELRSLLTKL
QNDMGIHPTEHMSLEELLKRKQRAPSPPQPVQEITNDPPRAPDAAAVMSILQKLKGLSNG
GSSNPPAPPAQPQIPQQPQQQGEQMPRSDNASRMWFSDKIVAHKDRVESNVQKLYAALPL
VCRASGLRFREQAQLDAHLDFLFQYNRARKERGKGGVSRSWYPDEDQWVADFSGDTAPRE
STSSSFFDRTQKENEKNAGEQASWENASVPVDETITRCRICGENFSRSWDEEEEDWMYTN
AVAGTIHNTGPGGDEQQETIFHKYCYDTVMANSKHITPAHLIPAERDVAIKGATSSDDSM
NGGGVKRTLEQDDSDSDGDEDVKRVKTD
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcgctcgtctgtttggcgcctaagaccccagcgataacagcggtggaggcgata
ggacccttgggacccattaactggtcgtctccgagcttctgcagctctgcaagaactgaa
ggaggcaagcggatcgttgaacgagctgtggctgagcgtcgcgtcaccttcttggagccc
acgtctaccatatgcggggacgtgccgtcacgactcacacaagaagccagccagaccacg
caagtgcctgcttcctcgcctctcgcccgcactccactcccagtccacgcagcttctcga
ccgatggcgatggctcagcttgcttcatctacgcccagtggcggcgccagctccggcccc
acgtccacgcacaagacggagatccagacgctactgggccagttcgacgcgcagatcaac
tccatgatggactacccggccaaggacacgatcaacgcgctgacgatgctggccgagcgc
tcgcagctcgcgcctgagattgttagcttcctggagaccaagatccaccgggtcgcgcct
aattgcaagctgccaatcttttacttaacggactccatcctcaagaacgtgcgtggcccg
tacgtcgcgctattcgccgccaagatcgtgcctctctactgcaactgtgtgcgtcaggtg
tcgggcaaagacctcaagcgcttcattcatgtgctcaacacgtgggagacaacgcggttg
tttaacgccgacgccatcgcgcagatgcgcagcgccgcgaaccgcgccatgcaacaagcg
gatccatcgactcggtcggtgcctgccagtattaatcaagaaaagtcgacgcaacagtcg
agggccaagctggctcagcaacaacaagacatggagctgcgctcgctgctcacgaagctt
cagaacgacatggggatccacccgaccgagcacatgagtcttgaggaactactcaagcgc
aagcaacgcgctccttcccctcctcagccagtccaagagatcactaacgacccacctcga
gctcctgacgctgctgccgtcatgtcgattcttcagaaactcaaggggttgtccaatggc
ggctcgtcgaacccaccagctcctcctgctcagcctcagataccgcagcagccacaacaa
caaggagagcagatgccacgcagtgataatgcctctcggatgtggttcagtgacaagatt
gtggctcacaaagaccgtgtcgagtccaacgtccagaagctgtatgccgccttaccgctt
gtgtgtcgtgcgagtggactacgcttccgtgaacaagctcaactggacgcccatctggac
ttcctcttccagtataaccgtgcccgtaaagagcgaggcaaaggaggcgtgtccagatca
tggtatccggatgaagatcagtgggtggccgacttctcgggagacacggcaccgcgtgaa
agcaccagtagcagcttcttcgacagaacgcagaaggagaacgagaagaacgcaggagag
caggcttcatgggagaacgccagtgtgccagtggacgagacgatcacacgctgtcggatc
tgtggcgagaacttttcaagaagttgggatgaggaagaggaggactggatgtacacgaac
gcggtggctggcacgattcataacactggacctggaggagacgagcagcaagagacgatc
ttccacaagtactgctacgacacagtgatggccaactcgaaacacattacaccggcgcat
ttgatccctgcagaacgagatgtagccatcaagggggcgacgagctccgatgatagtatg
aatggtggcggagtgaagcgaacattggaacaggacgacagtgatagtgatggggatgaa
gatgtgaaacgcgtgaagacagactga
DBGET
integrated database retrieval system
