Phytophthora infestans: PITG_09943
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Entry
PITG_09943 CDS
T01333
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pif
Phytophthora infestans
Pathway
pif03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pif00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PITG_09943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pif03041
]
PITG_09943
03009 Ribosome biogenesis [BR:
pif03009
]
PITG_09943
Enzymes [BR:
pif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PITG_09943
Spliceosome [BR:
pif03041
]
Complex A
U2 snRNP components
U2 related factors
PITG_09943
Complex B
PITG_09943
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
PITG_09943
Ribosome biogenesis [BR:
pif03009
]
Eukaryotic type
90S particles
Helicases
PITG_09943
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
T2SSE
nSTAND3
AAA_30
SRP54
AAA_16
ABC_tran
TsaE
Herpes_ori_bp
NACHT
ResIII
Helicase_RecD
AAA_11
Sigma54_activat
ATPase
Motif
Other DBs
NCBI-GeneID:
9474713
NCBI-ProteinID:
XP_002902488
UniProt:
D0NDW9
LinkDB
All DBs
AA seq
719 aa
AA seq
DB search
MNERKRKVDIGDLDIKKKKRKSRFSDAPPAASSSDAGVNPLTGAPFSARYQTLLAQRQKL
PVHQFLDQIQDAVKAHQVIVVEGETGSGKTTQIPQFLTLLNASSGKMVACTQPRRVAAMS
IAKRVAEEMDVQLGQEVGYTIRFEDVTSQRTKLRFLTDGMLLQHAMSDPLLSNYSTILLD
EAHERTLSTDILFGLLKEVLPKRPDLKVVVMSATLDAVKFQKYFEGAPLIAIPGRTFPVE
IFYTPEPERDYLEAAVRTAVQIHICEEEGDVLLFLTGQEEIENACRQIRAEADALDSSKY
GPLDVYPLYSSLTPQQQQLIFKDAPPPRFPGGPKGRKIVVSTNVAETSLTIDGIVYVVDP
GFSKQKVYNPRIRVESLLVSPISRASAKQRSGRAGRTRPGKCFRLYTEQSFMRDLEEQTY
PEILCSEMSGVVLTLKQLGIDDLVHFDFMDPPAPETLMRALEMLNYLGALDDEGELTELG
RQMAMLPVLPQLAKMLISSAKYQVPQEVATIVAMLSVQEPFVRPKNDAKAANEAKATFAH
VDGDHLTLLNVFHAYKLNNGDVNWCFQNYLNNRSLQSASNVRDQLIRNMKRLEMPTQSTL
DIHSPQYYPNIIKALVSGFFMQVGHKAAGGHYVTVKDNQVVHLHPSCVLDNKPDWVVYNE
FVLTSRSYIRLNTRIMGEWLVDIAPHYFDLANFPPGEAKRELETLYRRMNARNNSKSLR
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaacgcaagcgcaaggtagacatcggcgacctggacatcaagaagaaaaagcgc
aagagccggttctcggacgctcctcctgccgcttcctcttccgatgccggagtgaacccg
ttgacaggagctcctttctcggcgcgataccagacgctacttgcccagcgtcagaagctg
ccagttcaccagttcctcgaccagattcaggacgctgtcaaggcgcatcaggtcattgtc
gtagagggcgagacgggtagtggcaagaccacgcaaatcccgcaattcctaacgttgctt
aacgcctccagcggcaagatggtggcctgtacgcagccacgtcgagtggccgccatgagc
atcgccaagcgtgtggccgaggaaatggacgtgcaactcggacaggaagtaggttacact
atccgattcgaggacgttacgagccaacgcaccaagttgcgcttcctcacggacggtatg
ctgctgcaacacgccatgagtgatccgctgctgtccaactactcgaccatcttgctggat
gaggcacacgaacgcactttgagtacagatatcctgttcggtttactcaaagaggtgcta
cccaagcgtccagacctcaaggtcgttgtcatgagtgcgacgctggatgctgtcaagttc
cagaagtacttcgaaggcgcaccactcattgcgatccctggacgtaccttccccgtggag
attttctacacaccggagccggaacgcgactacctggaggctgctgtgcgtacggccgtg
cagatccacatctgcgaggaagaaggagacgtactgctcttcttaactggccaggaggag
attgagaacgcgtgtcgtcaaattcgtgcggaagctgacgcgttggactcgtccaagtac
ggcccacttgatgtgtatccgctgtactcgtcactcaccccgcaacaacagcaacttatt
ttcaaagacgccccgccgccgcgcttcccgggaggtcctaagggccgcaaaattgtcgtg
tctaccaatgtggcagaaacctcattgaccatcgacggtattgtgtacgttgtggacccg
ggtttctccaagcagaaggtgtacaacccgcgtattcgtgtcgagtcgctgttggtgtcg
cctatttctcgcgcttcggctaaacagcgttctggtcgtgctggtcgtacgcgtccgggt
aaatgcttccgtctctacactgagcagtcgttcatgcgcgacctggaggagcagacttac
cccgagattctgtgttctgaaatgagtggcgtcgtcctgacactgaagcagctgggtatt
gacgatctggtgcactttgacttcatggacccacctgctcctgagactttgatgcgtgcg
ttggagatgctgaactatctcggtgcattggacgacgaaggtgagcttacggaactcggt
cgtcaaatggctatgctcccggtactgccgcagttggcaaagatgttgatctcatcggcg
aagtatcaggtgccacaagaggtggctactatcgtagctatgctgtctgtgcaagaacct
tttgtccgtccgaagaacgacgccaaggctgccaacgaggccaaggcgaccttcgcacat
gtggatggtgaccatctcactctgctgaatgtgttccacgcgtacaagttgaacaacggt
gatgtgaactggtgcttccagaactacctgaacaaccggtcgctgcaaagcgcgtcgaac
gtgcgtgaccagctgatccgcaacatgaagcgactggagatgccgacgcagtcgacgctg
gacatccactcgcctcagtactaccccaacatcatcaaggcgctggtgtccggattcttc
atgcaggttggccacaaggctgctggtggccactacgtgacggtgaaagacaaccaggtc
gtgcatctacacccttcgtgcgtgctggacaacaagcccgattgggttgtctacaacgag
ttcgtgctcaccagccgcagttacattcgtctgaacactcgcattatgggcgaatggctc
gtggacatcgcacctcactactttgacctggccaacttccctcctggtgaagccaagcga
gagcttgagacgttgtaccgccgcatgaatgcgcggaacaactccaagagccttaggtaa
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