Phytophthora infestans: PITG_13976
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Entry
PITG_13976 CDS
T01333
Name
(RefSeq) DEAD/DEAH box RNA helicase, putative
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pif
Phytophthora infestans
Pathway
pif03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pif00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PITG_13976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pif03041
]
PITG_13976
Enzymes [BR:
pif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PITG_13976
Spliceosome [BR:
pif03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
PITG_13976
Complex B
PITG_13976
Complex C
U2 SnRNP specific factors
PITG_13976
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
9461828
NCBI-ProteinID:
XP_002899634
UniProt:
D0NN87
LinkDB
All DBs
AA seq
456 aa
AA seq
DB search
MAKKVMEVLTPIDHSTVTYEPFRKSFYSAHSETCALKAQEVANLRSELDVRVDGVDVPAP
VRSFMHLGLDRKMLQTLMKLGLEAPTAIQTQAFPVALSGRDLIGIAKTGSGKTLAFTLPM
VRHVMDQRELQRGEGPIALVLAPTRELAHQTYVQAKKFLAVYGASCAAIYGGAGKWEQVQ
ALKKGVEVVVATPGRLIEMIRKKAAPMNRVTFVVLDEADRMFEMGFEPQLRSVMGQVRPD
RQILMFSATFRRRIETLALDVLTNPVKLTVGQIGQANEDIRQIAVVLPGHGAKWPWLMSK
IRSLVDEGRLLIFAGSKAGCEELAKNLAVAFPAAPALCLHGDKTQQERAEALTKFKHGAC
RVLVATDVAARGLDVKDVKNVVNFDVAKSIDTHVHRIGRTGRMGLEGFEPGTAYTLVTRN
ESQFAAQLVYNMDVSGQSVSAELLALARKDSRFQQS
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaagtgatggaagtcttgacaccaatcgaccattccacagtgacatacgaa
ccatttcgcaaaagtttctactctgctcacagcgaaacttgcgctctcaaggctcaagaa
gtggcaaatctccgctccgagctggatgtccgtgtggatggagtcgacgtccctgctccc
gtgaggtcgttcatgcatctcggcttggaccgcaaaatgctgcaaacacttatgaaactg
ggactggaggctccgacggcaattcagacgcaagcttttcctgtggctctctcgggtcga
gatttgattggcattgccaagacgggatcgggcaaaacgttggcctttacattgcccatg
gttcgtcacgtgatggaccaaagagagttgcaacgtggcgaaggacccattgcacttgtg
ttggcaccaacacgagagctagcacaccagacttatgtacaagcaaagaagttcctcgca
gtgtatggcgcttcgtgtgctgcaatttacggtggagctggcaaatgggaacaagttcag
gcactgaaaaaaggtgtcgaagttgtcgttgccacacctggtcgactgattgagatgata
aggaagaaagcggctccgatgaatcgcgtgacttttgtggtgctagatgaggccgatcgc
atgtttgaaatgggttttgagccccaattacgctccgttatgggtcaagtgcgtccagat
cgacagattctcatgttctcggccacttttcgtcgacggattgaaacgttggcgttggat
gtacttacaaacccagtgaagctgacagttgggcaaattggacaagcgaacgaagatatt
cgtcagattgctgtcgtgttgcctggacatggagccaagtggccatggttgatgtcgaaa
atacgcagtctagtggacgaaggtcgcttgcttatcttcgctggtagtaaagctggttgc
gaggagctagcgaagaatttggctgttgcattcccagctgcacctgcgctgtgtttgcat
ggagacaagacgcaacaagagcgagcggaagcgttgaccaagtttaaacatggagcatgt
cgcgttctggtggctacggatgtggctgcgcgtggacttgacgtcaaagatgtgaagaat
gtcgtgaactttgatgtggccaagagtattgacactcatgtgcatcggatcggacggaca
ggacgtatgggactggaaggttttgagcctgggacggcgtatactttggtgacacgcaac
gagtcgcagttcgctgctcaacttgtgtacaatatggacgtctctggccaatcagtatct
gcggagttactggcgcttgcgagaaaggactcgaggttccagcaaagctga
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