KEGG   Phytophthora infestans: PITG_17072
Entry
PITG_17072        CDS       T01333                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4, putative
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pif  Phytophthora infestans
Pathway
pif03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pif00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PITG_17072
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pif03041]
    PITG_17072
Spliceosome [BR:pif03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    PITG_17072
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_TEP1_C PRP4 Beta-prop_IFT122_1st Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_DCAF4 NBCH_WD40 Beta-prop_SCAP Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_SPT8 WD_LRWD1 WDR54 Beta-prop_WDR75_2nd Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 9465540
NCBI-ProteinID: XP_002896977
UniProt: D0NUY6
LinkDB
AA seq 525 aa
MGERKGIYFGAIDASAGDMVSSSVRNASGNGHMIRNLEAAIRAGNVNVSDNVETEVLQLS
ESSRAAQEKHAQLLRRIEAEKRARNIAVPTIVEEVILRLRQLGEPITLFGERPADRRERL
REILSRLELEAEETGFVHQVLADIQKQDATKPQQDQLFYVPIKNEALKSVRATIFAHTTS
AVGARLKRERQEQVMSLEERARKLDHHAAELYATALKMANVASQNGDVRPLASVRYSADG
AHVATGSWSSLVKVWDATNANEVKLFRGHEDRVTGVAWHPTNAFSEMTDGAASVCLCSGS
ADGTARLWGASRNEPLAVLRGHKARLGKVAFHPLGNYIGTTSFDHTWRLWDVATAQELLL
QEGHYKEVYAIAFQKDGALAATGDLNGNGRVWDLRSGKAILPLQGHSKQILSMDFAANGV
QLASGSDDRSVRIWDLRQQKCSYMIPAHSNLVSDVRFSPGSGELLLSASYDSSIKLWRTR
DWKLMTTLRGHDGKVMSADFAPDEKHVVSCGFDRTFKLWAHENEF
NT seq 1578 nt   +upstreamnt  +downstreamnt
atgggtgagcgcaagggcatctactttggcgctatcgacgccagcgctggcgacatggtg
tctagcagtgtacgcaatgcgagcggaaatggacacatgatccgcaacttggaggcggcc
atccgcgctggtaatgtgaacgtatcggacaacgtggagacagaggtgctgcaactgtcc
gagagcagtcgcgccgcccaggagaagcacgcacagctgctgcgtcgtattgaagcagag
aagcgagcgcgtaacattgcagtgcctactattgtcgaggaagtgatactgcgactacgg
caacttggcgagcccatcacactgttcggagagcgtccagcggatcgacgcgaaagactg
cgtgagattctgtcacgtctggagctggaggctgaggagacaggttttgtacaccaggtt
cttgcagatattcaaaaacaggatgcgacgaagccccagcaggaccaactgttctacgtg
cccattaaaaacgaggcacttaagagtgtgcgtgccacaatatttgcacacactacgagt
gctgtgggtgcacgactgaagagagagcgacaggagcaggtcatgagcttggaggaacga
gctcggaaactagatcaccacgcagcggagctatacgcgacggctttgaaaatggccaat
gtagcgagtcagaatggcgacgtgcgtcctctggctagtgtacggtattcggcagatggt
gctcatgtggccacgggctcgtggagtagcctggtaaaggtttgggacgccacgaacgct
aatgaggtcaaattgttccgtggacacgaagaccgtgtaactggagtcgcgtggcatccg
accaacgcattttccgagatgacggatggagctgcctccgtgtgtctttgtagtggttct
gctgacggcaccgcacggctctggggtgcatctcgcaatgagcctcttgctgtgctacgt
ggccacaaggcgagactgggaaaggttgctttccacccactgggaaattacattggtaca
acaagtttcgaccacacatggcggctttgggacgttgcaacagcgcaggagctgctgctg
caggaaggccattacaaggaggtatatgccatcgcgtttcagaaggacggtgcgctcgca
gcgacaggcgacttgaacggtaatgggcgagtttgggacctccgttcgggcaaggctata
ctgccattgcagggccactcgaagcagattttgtccatggactttgctgctaatggcgta
cagttggcgtcgggtagtgatgaccgcagtgttcggatctgggatttgcgacagcaaaag
tgctcgtacatgattccagcgcatagtaacttggtgagcgacgtgcgcttttcgcctgga
tctggtgagctgctgctcagtgcctcgtacgactcgtccatcaagctttggagaactcga
gactggaagctgatgaccactttgcgtggtcatgacggcaaggtgatgtcagccgacttt
gctccagacgagaagcacgtagtttcctgcggctttgatcgcacatttaagctttgggcc
cacgagaacgaattctaa

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