Phytophthora infestans: PITG_21077
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Entry
PITG_21077 CDS
T01333
Name
(RefSeq) DNA-directed RNA polymerase II largest subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pif
Phytophthora infestans
Pathway
pif03020
RNA polymerase
pif03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pif00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PITG_21077
09124 Replication and repair
03420 Nucleotide excision repair
PITG_21077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pif03021
]
PITG_21077
03400 DNA repair and recombination proteins [BR:
pif03400
]
PITG_21077
Enzymes [BR:
pif01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PITG_21077
Transcription machinery [BR:
pif03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
PITG_21077
DNA repair and recombination proteins [BR:
pif03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
PITG_21077
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
9466881
NCBI-ProteinID:
XP_002895253
UniProt:
D0P371
LinkDB
All DBs
AA seq
1858 aa
AA seq
DB search
MASTQFSYSSARLRRVKYLQFGVFSPEEIRAMSVTKQTKVNDRIIPDGISRPETYLNGHP
VIGGIGDPRMGTCDFRARCKTCDCTYSGSGGKVNDCPGHFGHVELARPMYHMGFIKEVLK
ILRCVCFHCSKVLSDERDHRFRSAMKIKNGKRRLKAVYEICSNKSMCEYGEEADMEKMRE
DLNIGLQGGLDDKSKPKEGGHGGCGGLQPKYRKQGIKLLVEFPEQMEDVPGSGDRKQNLP
AAKVLSIFKNISDEDCFALGLDPRWARPDWLVMTLMPVPPPHVRPSVAIDGMARGEDDLT
HNLASIVKANLALLNCVRKGEPSHIIEQFEQLLQFHLATFLNNEQPGLPQAQQRSGKPLK
TLRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLAIDQVGVPRSIAMNLTVPERVTPF
NMNYMHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVL
FNRQPSLHKMSIMSHRVKVFDWSTFRLNLSVTSPYNADFDGDEMNLHVPQSMTARADAQE
LMMVHKVIITPQSNRPVMGIVQDSLLGAQKFTKRDIFLHKDWVMNLLMWVSNWDGKVPTP
AILVPKKGELGKYTPIWTGKQIFSAIVPAINFTGFSSTHKSSEKFSDLSPIDSRVIIQQG
ELLAGIIDKKIIGSSAGGLVHITMLEKGPDETKRLLGAIQQLVNNWLVGRSFTVGVSDTI
ADVSTLKTIVDIITQAKVQVHDLVVRGQKGKLETQPGRTMVESFEGLVNIVLNTARDQAG
REAQGSLDETNNIKATVTSGSKGSFINISQIIACVGQQNVEGKRIPYGFNHRTLPHYGKD
DLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMESVMT
RYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESHKLNKVQFEKKYVFDPSDEDLGCVP
NCPDQLYLEPDIIKDIRTNQRTQQLLREELTQLQKDRVNLRVILASRGQGQESDNAAQIP
VNIRRLVENAQQLFSIDMRKPSSLHPSRIIEGVKELCKKIIVVQGDDRLSIEAQENATLF
FQILLRSTLASKCVTLEHRLTETAFEWLMGEIESKFTSALVSAGEMAGVVGAQSIGEPAT
QMTLNTFHYAGVSAKNVTLGVPRLKEIMNIAKDVRTPSLRIFLTPDCAHDADKAKFIQSQ
LEYTTLADVTANTSIYYDPDPMNTVVEEDQEFVASYYEMPDEDTPIARSPWLLRIELNPK
MMADKKLTMGEIAAQVEAEYGQDLSCIFTDDNADRLVLRIRIMSDEEEKLQRSGETAVGQ
EDDTFLKRVEHNMLTQMKLRGIEGVKKVYIREGPSTHWFDDVGFKMMNEWMLDTDGTNLL
DVMCYPQVDSTRTISNDIVEIIQVLGIEAVRRALLNEIRQVISFDGAYVNYRHLACLCDV
MTFRGHLMAITRHGINRDDSGPLVRCSFEETVEILMDAAMFSEGDPLTGVSENVMLGQLA
PLGTGIMDLVLDAKKLANAIEYEASEIQQVMQGLDNEWRSPDQGPGTPMATPFASTPGFS
ASSPFSPGGGSFSPAAGAFSPMASPASPGFMAASPAHSPASPLNPTSPAYSPMSPAYSPT
SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY
SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTS
PAYSPTSPAYSPTSPAYTPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTS
PAYSPTSPAYSPTSPGYSPTSPSYSPASPEYNPTEGYNPSASGYSPTDADEKKEEDSK
NT seq
5577 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctacgcagttctcgtactcgagcgcgcgtctgcgccgcgtcaagtacctgcag
ttcggcgtgttcagccccgaggagatccgcgccatgtctgtgactaagcagacgaaggtc
aacgaccgtattatccccgacggcatttcgcgcccggaaacgtacttaaacggacatcct
gttattggaggcattggagacccacgtatgggcacgtgtgacttccgcgctcgttgcaag
acttgtgactgcacatacagcggcagtggaggcaaggtgaacgactgtccgggtcacttt
ggccacgttgagctggcccgccccatgtaccacatgggttttatcaaggaagtgctcaag
atcctacgctgtgtgtgttttcactgctccaaggtgctgagcgacgagcgcgaccatcgc
ttccgctctgccatgaagatcaagaacggcaagcgtcgactgaaggccgtgtacgagatc
tgcagcaacaagagcatgtgtgagtacggcgaggaagctgacatggagaaaatgcgcgag
gacctcaacatcggtctacaggggggactggacgacaagtccaagcccaaggagggtggt
cacggaggttgtggtggtctccaacccaaataccgcaaacagggtatcaaactgttggta
gagttccctgaacagatggaagatgtgcccggttcgggtgatcgcaagcagaatctgccg
gctgcgaaggtgttgtcgatcttcaagaacatatcggacgaggactgcttcgctctcgga
ctggaccctcgctgggctcgccctgattggcttgtcatgactctcatgccggtgccgccc
ccgcacgttcgtccttctgtggctattgacggtatggcgcgtggtgaagacgatcttacg
cacaatttggcttctattgtaaaggcgaatttggcgttgctgaattgtgtgcgcaagggc
gaaccttcgcatattatcgagcagttcgaacaactgttgcagttccatttggcgactttc
cttaacaacgagcagcctggtctcccacaagctcagcaacgttccggtaagccgcttaag
acactgcggcagcgtctgcgtggtaaggaaggccgtattcgtggtaacttgatgggtaaa
cgtgtggatttctcggctcgtacggtcattactgctgatccgaacctggctattgatcaa
gtcggcgtccctcggtccatcgcgatgaatcttactgtgccggaacgtgtgactccgttc
aatatgaattacatgcaccagctgattgcaaatggcccgcttgaacatcctggtgccaag
tacatcattcgcgaagacggcaatcgtattgatttgcgttacatcaagaacaagtcggac
cttgcgcttaagtgcgggtggatcgtggagcgtcatcttcgtgacgatgatttggtgctg
ttcaaccgtcaaccttcgttgcacaaaatgtccattatgtcgcaccgtgttaaggtgttt
gactggtcgacgtttcgtctgaatctgtccgtcacgtccccatacaacgccgatttcgat
ggtgatgaaatgaacctgcacgtgccacagtcgatgacagctcgtgctgatgcacaggaa
ctcatgatggtgcacaaggtgattatcactccgcagagcaatcgccccgtcatgggtatt
gtgcaggattctctgctcggtgcacaaaagtttactaagcgagatatcttcttgcacaag
gattgggtcatgaacctgctcatgtgggtttccaattgggatggcaaggtcccaacacct
gctattttggtaccgaagaaaggagaattgggcaagtacacgccaatctggacaggaaag
cagattttctcggcaattgtccctgcgattaactttactgggttttcgtcgacacacaaa
agtagcgagaagttctcagatctgtctcctatcgactctcgtgtgataattcagcagggt
gagttgttggcgggtataattgacaagaagatcattggttcatcggccggtggtttggtc
cacattacgatgcttgagaagggacccgatgagaccaaacgtcttcttggtgcaattcaa
cagctggtgaacaactggttggttgggcgtagtttcactgtcggtgtgagtgacacgatt
gccgatgtgtctacgctgaagactattgtggatattattacccaggccaaggtgcaagtg
cacgatttggtggtgcgtggacagaaaggaaaactggaaactcagcctggccgaacaatg
gttgagtccttcgaaggtttggttaatattgtgttgaacactgctcgtgatcaagctggt
cgtgaggcacagggcagtctggatgagacgaacaacattaaggctacggtaacgtccggt
tccaagggttctttcattaatatctcccagattattgcttgtgtgggtcagcagaacgtt
gaaggaaagcgaatcccgtacggttttaaccaccgtacgttgccgcactacggcaaggat
gaccttggccccgagagtcgtggtttcgttgaaaactcgtacctgaagggcttgacgcca
caggagttcttcttccacgctatgggtggtcgtgaaggtctgattgatacagctgtgaag
acggccgagactggttacattcaacgtagacttgtcaaggcaatggagtcggttatgaca
cgctacgatggcactgtgcggaacgctcagggtgaaattattcaatttttgtacggcgag
gacggtatggatgctgtctgggtcgaaaagcaacgattcgaatcgcataagctgaacaag
gtgcagtttgaaaagaagtacgttttcgacccgtcggatgaagaccttggatgtgtaccg
aactgccccgaccagctatacctcgagccggacatcatcaaggatattcggacgaaccag
cgcacacaacagctgctgcgtgaagagctgacgcagcttcagaaggatcgtgtgaacctg
cgtgtcattttggcaagtcgtggccagggccaggagtccgataacgccgcccagattccg
gtgaatatccgtcgtttggtggagaatgcacagcagctgtttagcatcgacatgcgaaag
ccatcaagtcttcacccgtcacgcataattgaaggagtgaaggaactgtgcaagaagata
atcgttgtgcagggcgatgaccggctgagtatcgaggcccaagagaatgcgacactgttc
ttccagattttattgcggtcaacgcttgcgtccaagtgcgttacactggagcaccgtttg
acggagacagcattcgagtggctcatgggtgaaattgagtccaagtttacgagcgcgttg
gtgtctgctggtgagatggcaggtgtggtgggagcccagtcgattggtgagccggcgacg
cagatgacactgaacacattccactacgccggtgtgtctgctaagaatgtgacacttggt
gtgcctcgcctgaaagaaattatgaacattgcgaaggacgttcggaccccatcgctgcgt
atcttcttgacgcctgattgcgctcatgatgccgataaggctaagtttattcagtcacaa
ctagagtacacgacattggcagacgtgacggccaacacctcgatctactatgatcctgat
ccgatgaacacggtggtcgaagaggaccaggagtttgtggcttcgtactacgaaatgccc
gatgaggacacgccgatcgctcgttctccgtggcttctgcgtattgagctgaacccgaag
atgatggcagacaagaagttgacgatgggtgaaatcgctgcacaagtggaagctgagtat
gggcaggatctttcgtgtatctttactgatgataacgctgatcgcctggtgctgcgtatc
cgtataatgagcgacgaagaagagaagctgcagcgctcaggtgagactgcagttggacag
gaagatgacacatttctgaagcgtgtggagcacaatatgctcacgcagatgaaattgcgt
ggtatcgagggtgtgaagaaggtttacattcgtgaaggaccgtcgacacactggtttgac
gacgttggtttcaagatgatgaacgagtggatgctggatacagatggcacgaatcttctt
gatgtaatgtgctacccccaagtcgactccacccgtacgatctcaaacgacattgtcgaa
atcattcaggtgctgggtattgaagctgttcgtcgtgcgctactgaacgaaattcgacag
gtcatttctttcgatggtgcctatgtgaattaccgacatttggcgtgcttgtgtgatgta
atgacattccgtggtcacctcatggccattactcgtcacggtatcaaccgtgatgactct
ggtccacttgtccgctgttcgtttgaagagacggtggaaattctgatggatgcggccatg
ttctcggagggagatccactgacgggtgtgtcggaaaatgtcatgctgggtcagttggct
ccactcggtacaggaataatggatttggtgctcgacgcgaagaaactggcgaatgctatt
gagtatgaagcgtcggaaattcagcaggtgatgcagggtctcgacaacgaatggaggagt
ccggaccagggtccaggcacaccgatggcgactcctttcgcgtcgacgcccggtttctcg
gcatcatcgccattcagccccggtggtggctcgttctcaccggcggctggcgctttctcg
cctatggcaagcccggcgtctcctggtttcatggcagcgtcgcctgctcacagccctgcg
tctccgttgaacccgacatcgcctgcatacagtccgatgtcgccggcgtacagcccaacg
tctccagcatactcgccgacgtccccagcctacagcccgacgtctcctgcgtatagtccg
acttcgcctgcttactcaccgacgtctccggcttacagccccacatcccctgcatattcg
ccgacgtctccagcttacagtccgacttctccggcatactcgccgacgtcaccagcctac
tcgccgacttctccagcttacagtccgacttcgccagcgtactctccgacatccccggca
tacagtccaacgtccccggcatactcgcccacgtcgcctgcatacagcccaacgtcgccc
gcatacagtccgacttcgcctgcgtactcaccaacgtcaccagcctacagcccgacatcc
ccggcgtacagtccgacgagtccggcttacagccccacttctccggcctacacgcctgcg
tattcgcctacgtccccggcgtacagtcccacatcaccggcatattcgccaacgtcgcct
gcgtactcgccgacatctccagcgtactcgccaacgtcgccagcatactcgccaacttca
ccggcgtacagtccgacttcgccagcttactcgccgacttctccagggtacagcccgacg
tcgcccagctatagtcctgcctctcctgagtacaacccgacggagggctacaatccgagt
gcaagtggctacagcccaacggatgccgatgagaagaaggaagaggattcgaagtga
DBGET
integrated database retrieval system
