Pigmentiphaga sp. H8: EGT29_00780
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Entry
EGT29_00780 CDS
T05719
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pig
Pigmentiphaga sp. H8
Pathway
pig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGT29_00780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pig03019
]
EGT29_00780
Enzymes [BR:
pig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EGT29_00780
Messenger RNA biogenesis [BR:
pig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EGT29_00780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
HI1480
Motif
Other DBs
NCBI-ProteinID:
AZG11516
LinkDB
All DBs
Position
163128..164564
Genome browser
AA seq
478 aa
AA seq
DB search
MRAIADAGYTHPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPLLHLLSSNRPAQMR
PGRPRCLILTPTRELTAQVEESVQIYGKYLPLKSMVMFGGVNINPQISALKKPVDILVAT
PGRLLDHVGQKTLDLSGVEILVLDEADRMLDMGFIRDIRKILALLPSKRQNLLFSATFSD
EIRALAKGVLNDPGEVSVARRNTASELVRQSVLLVQKEQKRDLLSHLVRSNGWKQVLVFT
RTKHGANRLAEKLVKDGVPAAAIHGNKSQSARTKALAGFKDGSVEVLVATDIAARGLDID
QLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDGEEGKLLADIEKLIKRKIDREP
LPAFTVSAPDRDERADRPPRSHAPRQGQGRQGAPRDGGRGQSAGHGSGGRQPSGGGRGQG
AARGQGPASRPASPSPARPVRPSRATPRRLPRARLRPAGEARNGGARRPALFTPKTQG
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgccatcgccgacgccggttatacccatcctacccccatccaggcccaggccatt
ccccaggtgctgaaggggggcgacctgctggctgccgcgcagaccggcaccggcaagact
gccggcttcaccctgcccctgctgcacctgctgtcgtccaaccgccccgcgcagatgcgt
ccgggccgtccgcgctgcctgatcctgacgcccacgcgcgaactgaccgcacaggtcgag
gaatccgtacagatctacggcaagtacctgccgctcaagtccatggtgatgttcggcggc
gtcaacatcaatccgcagatcagcgcgctgaagaagccggtggacatcctggtcgcgacc
cccggccgcctgctggaccacgtgggccagaagacgctggacctgtccggtgtcgagatc
ctggtgctggacgaagccgaccgcatgctggacatgggcttcatccgcgacatccgcaag
atcctcgcgctgctgccgtccaagcgccagaacctgttgttctcggccaccttctccgat
gagatccgcgccctggccaagggcgtgctgaacgatccgggcgaggtctcggtcgcgcgg
cgcaacaccgcctccgaactggtgcgccagtcggtgctgctggtgcagaaggaacagaag
cgcgacctgctcagccacctggtgcgcagcaatggctggaagcaggtgctggtgttcacg
cgcaccaagcacggcgccaaccggctggccgagaagctggtcaaggacggcgttcccgcc
gccgccatccatggcaacaagagccagtccgcgcggaccaaggcgctggccgggttcaag
gacggctcggtggaagtgctggtggcgaccgacatcgcggcgcgcggcctggacatcgac
cagttgccgcaggtggtgaatttcgagttgcccaacgtgcccgaggactacgtgcaccgc
atcggccggaccggccgcgcgggcgcgacgggtgccgcggtgtcgctggtcgacggcgag
gaaggcaagctgctggccgacatcgagaagctgatcaagcgcaagatcgaccgcgagccc
ctgcccgccttcaccgtgtcggcgcccgaccgcgacgagcgggccgaccgcccgccgcgt
tcgcatgcgccgcgccagggccagggacgccagggcgcgccgcgcgacggcggccgtggg
cagtccgccggccatggttcgggtggccgccagccgtccggcggcggccgtggacagggc
gccgcgcgcgggcagggcccggccagccggccggcctcgcccagcccagccaggcccgtc
cggcccagccgcgccacgccgcgccggcttcccagggcgcggcttcgtcccgccggcgaa
gctcgcaacggcggcgcccgccgccccgccctcttcacgcccaagacgcagggctga
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