Pigmentiphaga sp. H8: EGT29_13115
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Entry
EGT29_13115 CDS
T05719
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pig
Pigmentiphaga sp. H8
Pathway
pig03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EGT29_13115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pig03400
]
EGT29_13115
Enzymes [BR:
pig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EGT29_13115
DNA repair and recombination proteins [BR:
pig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EGT29_13115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Glyco_tran_WecG
SNF2-rel_dom
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AZG08730
UniProt:
A0A3G8GL10
LinkDB
All DBs
Position
complement(2759275..2762760)
Genome browser
AA seq
1161 aa
AA seq
DB search
MSLPASTASTSSPSASTPAACLPSALTQAVLAALRPGERYAQPRPPGAGDAWLLADLARR
AGKPLAVLTADPLDAQRLAEEIRLFSPGLRVHQFPDWETLPYDAFSPHEDLISERLKALH
ALLRQDVDVLTIPVTTALYRLAPPAFLAAYTFSFKQGDRLDEAALRAQLTLANYTHVTQV
TAPGEFCIRGSLIDLFPMGSALPYRLDLFDDTIESIRSFDIDTQRSLYPVKEIQMLPGRE
FPMDETARNEFRARFREEFEGDPSRATPYKDIGNGIAFPGVEYYLPLFFDETATLFDYLG
EQTVAVTLGDAEDTIRRFLQDTSSRYEFLKSDRERPILPPSRIFLDTDGLFGHLKRFARL
ALSGDRPHPAFTSPPEVAVQRKADDPVARLRALAARQDQRVLLCAESAGRRETIAQMLAE
FGLDPEPVESVQDFLGRTSSFAIGIAPLSSGFGLADPKLLFLTESDLFSGHAVRRGKRGQ
ERASNVESMVRDLSELRVGDPVVHVQHGIGRYQGLVSMDIGEGEMEFLHLEYAGGSTLYV
PVSQLHVIARYSGADPETAPLHQLGSGQWEKARRKAAAQARDAAAELLNLYARRALRQGH
MFKLPMSDYEAFAETFGFEETPDQAAAIQAVIQDMTSGKPMDRLVCGDVGFGKTEVALRA
AFIAVANSKQVALLCPTTLLAEQHAQNFADRFADWPVRVVELSRFKSAKDISASIEQIND
GRVDIVIGTHKLLSDKVRFKNLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPR
TLGMSLEGIRDFSVIATAPQKRLAIKTFVRREDGSTIREALLRELKRGGQVYFLHNEVET
IHNRRAKLEELVPEARIAVAHGQMPERELEQVMKAFYQQKYNVLLCTTIIETGIDVPTAN
TIVLHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITSNAKKRLEAIQAMEELGS
GFYLAMHDLEIRGVGEVLGESQSGNIQEVGFQMYTDMLNEAVRALKNGREPDLNAPLSAT
TEINLHVPALLPQDYCGDVHARLAIYKRLANCEDAADIDTIQEELIDRFGKLPEAARALI
EIHRLRLAAKSVGVIKIDASESAAVLQFEPNPPIDPMRVISLVQKNRHMRLSGQDKLRID
IKGADLKARVDAVRTVLRSLV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcccagccagtaccgcctccacgtcttccccttccgccagcacgcccgccgcc
tgcctgccttcggcgttgacgcaagccgtgctggccgcgctccggcccggcgaacgctat
gcccagccccgccccccgggcgccggcgacgcctggctgctggccgacctggcgcgccgc
gccggcaagccgctggcggtgctcacggccgatccgctggacgcccagcgcctggccgag
gaaatccgcctgttctcgcccggcctgcgggtgcaccagttccccgattgggaaaccctg
ccctacgacgccttctcgccccacgaagacctgatctccgagcgcctgaaggccctgcat
gccctgctgcgccaggacgtggacgtcctgacgataccggtcacgaccgcgttgtaccgg
ctggccccgcccgcgttcctggcggcctacacgttctcgttcaagcagggcgaccggctg
gacgaggccgcgctgcgcgcgcaactgacgctggccaactacacgcacgtcacgcaggtg
accgcgccgggcgaattctgcatccgcggcagcctgatcgaccttttccccatgggctcg
gccctgccctaccggctggacctgttcgacgacaccatcgagtccatccgcagcttcgac
atcgacacccagcgcagcctgtatcccgtcaaggagatccagatgctgccgggccgcgag
ttcccgatggacgagaccgcgcgcaacgagttccgcgcgcgctttcgcgaggaattcgag
ggcgacccgtcgcgcgccacgccctacaaggacatcggcaacggcatcgccttcccgggc
gtcgaatactacctgccgctgttcttcgacgagaccgccacgctgttcgactacctgggc
gaacagaccgtcgcggtcacgctgggcgacgccgaggacaccatccggcgcttcctgcag
gacacctcaagccgctacgaattcctcaagagcgaccgcgagcgccccatcctgcccccg
tcccggatcttcctggacaccgatggcctgttcggccacctgaagcgcttcgcccgcctg
gcgctgtccggcgaccgcccgcatccggcctttacctctccgcccgaggtcgccgtgcag
cgcaaggccgacgacccggtggcgcgcctgcgtgccctggcggcccggcaggaccagcgg
gtgctgctgtgcgccgaatcggccggccgccgcgagaccatcgcccagatgctggccgaa
ttcgggctggaccccgaaccggtcgagtccgtacaggacttcctgggccggacctcgtcc
ttcgcgatcggcatcgcgccgctgtcctcgggcttcggcctggccgaccccaagctgctg
ttcctgaccgagagcgacctgttctccggccacgccgtccgccgcggcaagcgcggccag
gagcgggccagcaacgtcgaatccatggtgcgcgacctgtccgagctgcgcgtgggcgat
ccggtcgtccacgtccagcacggcatcggccgctaccagggcctggtcagcatggacatc
ggcgaaggcgagatggagttcctgcacctggagtacgccggcggcagcacgctgtacgtg
ccggtgtcgcagctgcacgtgatcgcgcgctacagcggcgccgaccccgagaccgcgccg
ctgcaccagctcggctccggccagtgggagaaggcccgccgcaaggccgccgcccaggcc
cgcgacgccgccgccgagctgctgaacctgtacgcccgccgcgcgctgcgccagggccac
atgttcaagctgcccatgtccgactacgaagccttcgccgaaaccttcggcttcgaggaa
acgccggaccaggcggccgccatccaggccgtgatccaggacatgacctcgggcaaaccc
atggaccggctggtatgcggcgacgtgggcttcggcaagaccgaggtggcgctgcgcgcc
gccttcatcgccgtggccaacagcaagcaggtcgcgctgctgtgccccaccaccctgctg
gccgagcagcacgcgcagaacttcgccgaccgcttcgccgactggccggtccgcgtggtc
gagctgtcccgcttcaagtcggccaaggacatcagcgcgtccatcgagcagattaacgat
ggccgggtcgacatcgtcatcggcacgcacaagctgctgtcggacaaggtcaggttcaag
aacctcggcctggtcatcatcgacgaggaacaccgcttcggcgtgcgccagaaggaggcg
ctcaaggcgctgcgcgccgaggtcgacgtgctgacgctgaccgccacgcccattccccgc
acgctgggcatgtcgctggaaggcatacgcgatttctcggtcatcgccaccgcgccgcag
aagcggctggcgatcaagaccttcgtgcggcgcgaggacggcagcaccatacgcgaggcc
ctgctgcgcgaactcaagcgcggcggccaggtgtacttcctgcacaacgaggtcgagacc
atccacaaccgccgcgccaagctcgaggaactggtgcccgaggcgcgcatcgcggtggcg
cacgggcagatgcccgagcgcgagctggagcaggtcatgaaggccttctaccagcagaag
tacaacgtgctgctttgcaccaccatcatcgagaccggcatcgacgtgcccacggccaac
accatcgtgctgcaccgcgccgaccgcttcggcctggcccagctgcaccagttgcgcggc
cgcgtcgggcgctcccaccaccaggcctatgcctatctgctgacgcccggcgaggacgcc
atcaccagcaacgccaagaagcgcctggaagccatccaggccatggaggaactgggctcg
ggcttttacctggccatgcacgacctggagatacgcggcgtgggcgaggtgctgggcgaa
tcgcagtcgggcaacatccaggaagtcggcttccagatgtacaccgacatgctgaacgaa
gcggtccgggccctgaagaacggccgcgaacccgacctgaacgcgccgctgtcggccacc
accgagatcaacctgcacgtgcccgccctgctgccgcaggactattgcggcgacgtccat
gcgcgcctggcgatctacaagcgcctggccaactgcgaagatgccgccgacatcgacacg
atccaggaagagctgatcgaccgtttcggcaagctgcccgaggcggcgcgcgccctgatc
gagatccaccggctgcgcctggcggccaagtcggtgggcgtgatcaagatcgatgccagc
gaatcggccgccgtgctgcagttcgagcccaatccccccatcgatccgatgcgcgtcatc
agcctggtccagaagaaccgccacatgcgcctgtcgggccaggacaagctgcgcatcgac
atcaagggcgccgacctgaaggcgcgcgtggatgccgtgcgcacggtgctgcggtcgctg
gtctga
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