Pigmentiphaga sp. H8: EGT29_13380
Help
Entry
EGT29_13380 CDS
T05719
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pig
Pigmentiphaga sp. H8
Brite
KEGG Orthology (KO) [BR:
pig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pig03009
]
EGT29_13380 (rlmD)
Enzymes [BR:
pig01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EGT29_13380 (rlmD)
Ribosome biogenesis [BR:
pig03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EGT29_13380 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_25
Methyltransf_31
RrnaAD
Methyltr_RsmB-F
Methyltransf_32
Methyltransf_11
MTS
TRM5-TYW2_MTfase
Methyltransf_23
DOT1
Motif
Other DBs
NCBI-ProteinID:
AZG08777
UniProt:
A0A3G8GKV8
LinkDB
All DBs
Position
2814704..2816074
Genome browser
AA seq
456 aa
AA seq
DB search
MSQEADIAAADSLEGTAAAVEFDDGSVAIESVDLEGRGIARRQGKVVFVDGALPGERVML
KITKRKPSYELAEVESVVQASSQRVAPRCAHFGVCGGCAMQHVDPAAQVAIKQRVLEDTL
WHIGKLVPQRVLPPIHGPAWGYRYRARLSVRVVVKKGGVLVGFRERKSSYVADMRECHVL
HPHVASLLVPLREMVAAMPARDRVPQIEVAVGDNQIVLVLRHLIPLVDEDLAVLREFAAR
HGIHWWLQPKGPDTVHPLEPEDIDGLAYTLPEFGLRMPFKPTDFTQVNHAINRVLVSRAL
ALLDPQPEDRVADLFCGLGNFTLALATRCREVVGVEGSQALTDRALEAARRHGVDAHTAF
STLNLFEVDETWLRSLGRFDRMLIDPPREGALAVAKALTTLGADRPRRIVYVSCNPATLA
RDAAILVHEGGYTLRAAGVVNMFPHTAHVESIAVLE
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaagaagcagacattgcggccgcggacagcctggaagggacggctgctgccgtc
gaattcgacgacggttccgtggccatcgaatcggtggacctggaagggcgcggcatcgcg
cgccgccagggcaaggtggtgttcgtcgacggcgcgctgcccggcgaacgcgtgatgctg
aagataaccaagcgcaagccctcctacgagctggccgaagtcgagagcgtggtgcaggcg
tcgtcgcagcgcgtggcgccgcgctgcgcgcatttcggcgtctgcggcggttgtgccatg
cagcacgtggatccggccgcgcaggtggcgatcaagcagcgcgtgctggaagacacgctc
tggcacatcggcaagctggtgccgcagcgcgtcctgccgcccatccacggccccgcctgg
ggataccgctaccgcgcccggttgtcggtccgggtggtggtcaagaagggcggggtgctg
gtgggctttcgcgagcgcaagagcagctacgtggccgacatgcgcgaatgccacgtcctg
catccgcacgtggcctcgctgctggtgcccctgcgcgagatggtcgcggccatgcccgcg
cgcgaccgcgtcccgcagatcgaagtcgccgtgggcgacaaccagatcgtgctggtgctg
cgccacctgattccgctggtggacgaggacctggcggtgctgcgcgagttcgcggcgcgc
catggcattcattggtggctgcagcccaagggaccggatacggtgcacccgctggagcct
gaggacatcgacggactggcctatacgctgccggagttcgggctgcgcatgccgttcaag
ccgaccgacttcacccaggtcaaccacgcgatcaaccgggtgctggtgtcgcgcgccctc
gcgctgctcgacccgcagcccgaggaccgggtagccgacctgttctgcgggctgggcaat
ttcaccctggcgctggcgacccgctgccgcgaggtcgtgggcgtggagggcagccaggcc
ctgaccgaccgggcgctggaagccgcccgcaggcatggcgtggatgcgcacacggcgttc
tcgaccctgaacctgttcgaagtggacgagacctggctgcgcagcctgggccgcttcgac
cgcatgctgatcgaccccccgcgcgaaggcgccctggccgtggccaaggccctgacgaca
ctaggggccgaccgcccccggcgcatcgtctacgtctcctgtaaccccgccaccctggcc
cgcgacgccgccatcctcgtccacgagggcggctataccttgagagcggcaggtgtggtc
aacatgttcccccatacggcccacgtggagtccatagccgtgttggaatag
DBGET
integrated database retrieval system
