Pigmentiphaga sp. H8: EGT29_15945
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Entry
EGT29_15945 CDS
T05719
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pig
Pigmentiphaga sp. H8
Pathway
pig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGT29_15945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pig03019
]
EGT29_15945
03009 Ribosome biogenesis [BR:
pig03009
]
EGT29_15945
Enzymes [BR:
pig01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EGT29_15945
Messenger RNA biogenesis [BR:
pig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EGT29_15945
Ribosome biogenesis [BR:
pig03009
]
Prokaryotic type
rRNA processing factors
EGT29_15945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PFF1_TM
Zn_ribbon_InsA
Motif
Other DBs
NCBI-ProteinID:
AZG09232
LinkDB
All DBs
Position
3372721..3375765
Genome browser
AA seq
1014 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVVTRVEPSLEACFVNY
GEERHGFLPFKEIARTYFKEGVDVRSARIQDVLREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMEQLQVPQGMSIIARTAGIGRNVEELQ
WDLSYLMQLWTAIDGAARENAGPILIYLESSLVIRAIRDYFSPDIGEILIDTDDIADQAC
AFMSVVMPDNVQRVKRYRDDVPLFSRFQIEHQIETAYARTVPLPSGGAVVIDHTEALVAV
DVNSARATKGSDIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMEDGKNQRAVEQR
LREALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDTESSALQ
VLRLIQEESMKENTAAVHAQVPVEVATFLLNEKRTDIAKMEARSKVNVILIPNKHLETPH
HRIERLRHDDPRLESAKASFELAEAPETNLAYSAQEHEVKARPEAIVKGITPAQPAPVSS
TPSPSAKAQPAAAPATGGFPALVSRLFAWLKGSPAQPAEPAARPRKDESREERDAHRNRR
RTPQGGGNRGRRDNREARPDDRDRQEGEEGRKEARDSRGQRRDGRRDDRARAPRQEEQQR
PVAAAPAADDAEQQSGEARNRNRRGRRGGRREDLPADEAAGSTVAAAAVVAGETLAPVVA
APEAPVVPQVPVAAEPQDLQDEEQFASADGADSADGEPERKRRRRRGRRGRRQGEAGAAL
GEDGLSDDESADDEDGAPVSAPVEPLAVVSEPILITAEARPIDTPVPVVAEVVHAPAEPV
QEAQPSSEAPSQAEEPAPVAIPQPAEEPAPAAAAEAPVQQAATIPVEPVLPVEAVSTPAP
QAEAPAAQPEPVAVEAQAEAPAPVTETPVPQPASILDAPAQIVVPQAAASHDELVRVVEQ
AGMQWVETDSAKLAASRQAAPAAAPVRLGREPRVHAQATSEALVQVETRPDLHH
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgttcaacgcaacgcaccaggaagaactgcgcgttgccatcgtcgat
gggcagaagctcatcgacctcgacatcgaaaccgccggccgcgaacaacgcaaaggcaac
atctacaagggcgtcgtcacccgcgtcgaacccagcctggaagcctgcttcgtcaactat
ggcgaggaacgccacggcttccttcccttcaaggaaatcgcccgcacctacttcaaggaa
ggcgtggacgtccgcagcgcccgcatccaggacgtgctgcgcgaaggccaggaactcatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggccctgaccacgttcatctcg
ctggccggccgctacctggtgctgatgcccaacaatccccgcggcggcggcgtatcgcgc
cgcgtcgagggcgaagaccgccaggaactgcgtgaaaccatggagcagctccaggttccg
cagggcatgagcatcatcgcccgcaccgccggcatcggccgcaacgtcgaagaactgcag
tgggacctgtcctacctgatgcagctctggaccgcgatcgacggcgccgcccgcgagaac
gccggccccatcctgatctacctggaatcgagcctggtcatccgggccatccgcgattat
ttctcgcccgacatcggcgagatcctgatcgacaccgacgacatcgccgaccaggcctgc
gccttcatgagcgtggtcatgccggacaatgtccagcgggtgaaacgctaccgcgacgac
gtgcccctgttctcgcgcttccagatcgaacaccagatcgagaccgcctacgcccgcacg
gtgcccctgccctcgggcggcgcggtggtgatcgaccacaccgaggccctggtcgcggtg
gacgtcaactcggcgcgcgccaccaagggcagcgacatcgaggaaaccgcgctgcgcacc
aacctggaagcggccgacgaagtggcccgccagctgcgtttgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggaagacggcaagaaccagcgcgccgtcgagcagcgc
ctgcgcgaagccctccatttcgaccgcgcccgcgtgcagatgggcaagatctcccgcttc
ggcctgatggagctgtcgcgccagcggctgcgcccggcgctgaacgagggctcgcacatc
acctgcccgcgctgcaacggcaccggcgtcatccgcgacaccgaatccagcgcgctgcag
gtgctgcgcctgatccaggaagaatccatgaaggaaaacaccgccgccgtgcacgcacag
gtgccggtggaagtggccaccttcctgctgaacgaaaagcgcaccgacatcgccaagatg
gaagcgcgctccaaggtcaacgtcatcctcatccccaacaagcacctcgagacgccccac
catcgcatcgagcgcctgcggcacgacgaccccaggctggaaagcgccaaggcgagcttc
gagctggccgaggcacccgagaccaatctcgcctattccgcgcaggaacacgaggtcaag
gcccgtcccgaggccatcgtcaagggcatcacccccgcccagccggcgcccgtctcgtcc
acgccctcgcccagcgccaaggcccaacccgccgcggcaccggccactggcggcttcccg
gcgctggtgtcgcgcctgttcgcctggctcaagggcagtcccgcccagccggccgagccg
gccgcccgcccgcgcaaggacgaatcgcgcgaggaacgtgacgcccatcgcaaccgccgc
cgcacgccccagggcggcggcaaccgcggccgccgcgacaaccgcgaagcgcgccccgac
gaccgcgatcgccaggaaggcgaggaaggccgcaaggaagcccgtgattcgcgcggccag
cgccgcgacggacgccgggacgaccgcgcccgcgcgcccaggcaggaagagcaacagcgc
cccgtcgccgccgcgcctgccgccgacgatgccgagcagcagtcgggcgaggcccgcaac
cgcaaccgccgcggccgccgcgggggacgccgcgaggacctgccggccgatgaggccgcc
ggctcgaccgtggccgcggccgccgtcgtggctggcgagacgctcgcgcccgtcgtcgct
gcgcccgaagctcctgtcgtgccgcaggtaccggtggccgccgagccgcaagacctccag
gacgaagagcaattcgcatccgccgatggcgccgatagcgccgatggcgaaccggaacgc
aagcgccgccgccgtcgcggccgccgtggccgccgccaaggcgaagccggcgccgccctg
ggcgaagatggcttgtcggatgacgaatcggccgatgacgaggatggcgcgccggtgtcc
gccccggtcgagccgctggccgtcgtgtccgagcccatcctgatcaccgccgaggcccgg
cccatcgacacgcccgttcccgtggtggcggaagtcgtgcacgcgccggccgaaccggtc
caggaagcccagccgtcctcggaagcgccttcccaggccgaggaacccgcgcccgtggcg
atcccgcagccggccgaggaacccgcgcccgcggcggccgccgaggcccctgtccagcag
gccgccacgatcccggtcgagccggtcctgccggtcgaggccgtgagcacgcccgcgccc
caagccgaagcccccgccgcgcagcccgaaccggttgccgtggaagcccaggccgaagcg
cccgcgcccgtgaccgaaaccccggtcccgcaaccggcctccatcctggatgcgccggcc
cagatcgtggtgccgcaggccgccgcgtcgcacgacgaactcgtgcgcgtggtcgagcag
gccggcatgcagtgggtggaaacggacagcgccaagctggccgcctcccgccaggccgcg
ccggccgccgcgccggtccgcctggggcgcgagccgcgcgtccacgcgcaggcgacgtcc
gaggcgctggtccaggtcgaaactcgtcccgacctgcatcactga
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