Pigmentiphaga sp. H8: EGT29_16520
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Entry
EGT29_16520 CDS
T05719
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pig
Pigmentiphaga sp. H8
Brite
KEGG Orthology (KO) [BR:
pig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pig03019
]
EGT29_16520 (hrpA)
Enzymes [BR:
pig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EGT29_16520 (hrpA)
Messenger RNA biogenesis [BR:
pig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EGT29_16520 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
T2SSE
AAA_19
nSTAND3
NACHT
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AZG09335
UniProt:
A0A3G8GMC3
LinkDB
All DBs
Position
complement(3491753..3495658)
Genome browser
AA seq
1301 aa
AA seq
DB search
MRLRSSQNYNDGLTQVLLMVAQSTKNVPLARRRNPVPPVTYPEDLPVSGRRDEIARALAA
HQVIIVSGETGSGKTTQLPKICLDAGRGVAGMIGHTQPRRLAATSVARRIAEELGTPLGE
VVGYQVRFNDRTAPGASVKLMTDGILLAESQRDPWLRAYDTLIIDEAHERSLNIDFLLGY
LRQLLARRPDLKLIITSATIDAERFARHFSLPGQPEVPVINVSGRLYPVEVRYRPVDTRG
MQASDGDEQPARKPERTREKENLSRDEERDLIDAIVDAVDECARHGAGDVLVFLPGEREI
REAAEALRKHHPPGTEVLPLFARLSQAEQERVFHPKGSGRRVVLATNVAETSLTVPGIRF
VVDTGLVRMKRYSWRNKVEQLRIEPVSQASANQRAGRCGRIGPGVCIRLYEDTDYAARPP
FTDPEILRSSLASVILRMKSLKLDDIEQFPFVEAPPGRAVADGYHLLQELGAIDEDNVLT
PVGRELARLPVDPRIGRMILAARDQSCLSEVLIIAAALSVQDPRDRPMDAQEAADQAHAK
FADERSEFMAFLKLWKWFNEAVEHKQSQRKLVENLRQNFLSPVRMREWRDVHSQLAAVVG
EHGWRLNQTEATLEQIHLALLAGLLGNLGYKSDEDAQYLGARGIRFFIHPGSRLAKKAGR
WVVAAELVETSRLFARCIARIDPTWVERVGGHLLRKNWSDPRWEKKEGRVVANERATLYG
LTIYAGRRIDYGRIDARQARELFIREALVTGELDSRLPFIAHNRKLVADIEKLEHKSRRP
DILVDEDLIFAFYERQVPADVNRVVTLEKWCQEEARKPGGGKLLFLSRDELMRHEAAGVT
TEVFPKKLSLHGIDMALDYHFEPGSPRDGVTLSVPLFALNQLDPARCEWLVPGMLKEKVH
LLLKSLPQKLRRHCVPLPEYAAGFYDRWFEQAQKPDRGLVEALIADVREQTTVQLAPSDF
KQETLPAHLSMNFRVVDEHGRMLDMSRNLSHLKAQLGREAQATFQQVAARDKEVAQALAH
ENLTDWTFGPLPELMEIKRGGLSVIGYPALVDRVTHCDLDVFDDPDEAARHHRAGLLRLF
RLQLKEQVKFLEKNLTGMTQMSMLYMPLGTQEELRDQIVDAALAQACLADPWPADAASFA
QRRTEGKGRVGLLAQEIARLVAAVLTEWAAAQRKLPQAKPHAAAHADMEQQMRGLMGKWF
VRDTPFPQLSHFPRYFKAAQARIDKLRADPARDARLLADLNQLLVPYQRARAARKGVPDG
KLDEFRWMLEELRVALFAQELRTPMPVSVKRLQKSWEALSR
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
gtgcggctgcgttcatcccaaaattataatgatgggttaacccaagttcttctcatggtc
gcacaatccaccaagaatgtgcctttggcacgacggcgcaacccggttccgcccgttacc
taccccgaagacctgcctgtcagcggccggcgagacgagatcgcgcgtgccctggcggcg
caccaggtcatcatcgtcagcggcgagaccgggtcgggcaagaccacccagctgcccaag
atctgcctggacgccggccgcggcgtggccggcatgatcggccacacccagccgcggcgc
ctggcggccacctcggtggcgcgccggatcgccgaggagcttggcacgccattgggcgaa
gtggtcggctaccaggtccgtttcaacgaccgcacggccccgggggcctcggtcaagctg
atgaccgacggcatcctgctggccgagtcgcagcgcgatccgtggttgcgcgcgtacgac
accctcatcatcgacgaggcgcacgaacgcagcctgaacatcgatttcctgttgggctac
ctgcgccagctgctggcccggcggcccgatttgaaactgatcattacatcggcaaccatc
gacgcggagcgcttcgcccggcatttcagcctgcccggccagcccgaggtgccggtcatc
aacgtctcgggacggctctatccggtcgaggtgcgctaccggccggtggacacccgcggc
atgcaggccagcgacggcgacgagcagccggccaggaagcccgagcggacgcgcgagaag
gaaaacctgtcccgcgacgaggagcgggacctgatcgacgccatcgtcgatgcggtggac
gagtgcgcccgccacggcgcgggcgacgtgctggtgttcctgcccggcgagcgcgagatc
cgcgaggcggccgaggccctgcgcaagcaccatccgcccggcaccgaggtgctgccgctg
ttcgcccggctgtcgcaggccgagcaggaacgggtcttccaccccaagggcagcggccgc
cgcgtcgtcctggccaccaacgtggccgagacctcgctgacggtgcccggcatacgcttc
gtggtcgataccggcctggtccggatgaagcgctattcgtggcgcaacaaggtcgaacag
ctgcgcatcgagccggtcagccaggcttcggccaaccagcgggccgggcgctgcggccgc
atcgggccgggcgtgtgcatccgcctgtacgaggacaccgactacgcggcgcgcccgccc
ttcaccgatccggagatcctgcgctcgtcgctggccagcgtcatcctgcggatgaagtcg
ctgaagctggacgacatcgagcagttccccttcgtcgaggcgccgccggggcgggccgtc
gccgacggctaccacctcctgcaggaactgggcgccatcgacgaggacaacgtgctcacg
cccgtggggcgtgaactggcacggctgccggtggacccgcgcatcggccgcatgatcctg
gcggcgcgcgaccagtcctgcctgagcgaggtgctgatcatcgcggccgcgctgtcggtg
caggatccgcgcgaccggcccatggacgcgcaggaggcggccgaccaggcccatgccaag
ttcgccgacgagcggtcggagttcatggccttcctgaaactgtggaaatggttcaacgaa
gcggtcgaacacaagcagtcgcagcgcaagctggtggagaacctgcgccagaatttcctg
tcgccggtgcgcatgcgcgaatggcgcgacgtgcattcgcaactggccgcggtggtgggc
gagcatggctggcgcctgaaccagaccgaggccacgctggaacagatccacctggcgctg
cttgccgggctgctgggcaacctcggctacaagtccgacgaagatgcccagtatctgggc
gcgcgcggcatacggttcttcatccatccgggttcccggctggcgaagaaggcggggcgg
tgggtcgtggcagccgaactggtcgagacctcgcgcctgttcgcgcgctgcatcgcgcgt
atcgatccgacgtgggtggagcgcgtgggcggccacctgctgcgcaagaactggtccgat
ccgcgctgggaaaagaaggaagggcgcgtggtcgccaacgagcgcgcgacgctgtacggg
ctgaccatctatgccggccgccggatcgactatgggcgcatcgatgcccgccaggcgcgc
gagctgttcatccgcgaggccctggtcaccggagaactcgacagccggctgcccttcatc
gcgcacaaccgcaagctggtcgccgatatcgagaaactcgaacacaagtcgcgccggccc
gacatcctggtcgacgaggacctgatcttcgcgttctatgaacggcaggtgccggcggac
gtgaaccgcgtggtgacgctggagaagtggtgtcaggaagaagcgcgcaagcccggtggc
ggcaagctgctgttcctgtcgcgcgacgagctgatgcggcacgaggcggcgggcgtcacg
accgaggtgtttcccaagaaactgtcgctgcacggcatcgacatggcgctcgactatcac
ttcgaaccgggctcgccgcgcgacggggtgacgctgtcggtgcccctgttcgcgctgaac
cagctcgatccggcgcgctgcgagtggctggtgccgggcatgctgaaggagaaggtccat
ctgctgctgaagtcgctgccgcagaagctgcgccggcactgcgtgccgctgcccgagtat
gcggcggggttctacgatcgctggttcgaacaggcgcagaagccggaccgcgggctggtc
gaggcgctgatcgccgacgtgcgcgagcagaccacggtgcagctggcgccgtcggacttc
aagcaggagacgctaccggcgcatctgtcgatgaacttccgcgtggtggacgagcacggc
cgcatgctggacatgagccgcaatctgtcgcacctgaaggcgcaactggggcgcgaggcg
caggccacgttccagcaggtggccgcgcgcgacaaggaggtggcgcaggcgctggcgcac
gagaacctgacggactggaccttcgggcccttgccggagctgatggagatcaagcgcggg
ggcttgtcggtgatcggttatccggcgctggtggaccgggtcacgcactgcgacctggac
gtgttcgacgatccggacgaggccgcgcggcatcaccgcgcggggctgctgcggctgttc
cggctgcaactgaaggagcaggtcaagttcctggagaagaacctgaccggcatgacgcag
atgagcatgctctacatgccgctgggcacgcaggaggaactgcgcgaccagatcgtggac
gcggcgctggcgcaggcctgcctggccgatccctggccggcggacgcggcgtcgttcgcg
cagcggcgtaccgagggcaagggcagggtggggctgctggcgcaggagatcgcgcgcctg
gtggcggcggtgctgaccgaatgggccgcggcgcagcgcaagctgccgcaggccaagccg
catgccgcggcccatgcggacatggagcagcagatgcgcgggctgatgggaaagtggttc
gtgcgcgatacgccgttcccgcagttgtcgcatttcccccggtatttcaaggcggcgcag
gcacggatcgacaagctgcgcgcggatccggcgcgcgatgcgcggttgctggcggatctg
aatcagttgctggtgccgtatcagcgggctcgggcggcgcgcaagggggtgccggatgga
aagctggacgagttccggtggatgctggaggaactgagggtggcgttgttcgcgcaggaa
ctgagaacgcccatgccggtttcggtcaagcggttgcagaagagctgggaggcattgagc
cggtag
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