Paenibacillus sp. IHBB 10380: UB51_12370
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Entry
UB51_12370 CDS
T03836
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pih
Paenibacillus sp. IHBB 10380
Pathway
pih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UB51_12370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pih03019
]
UB51_12370
03016 Transfer RNA biogenesis [BR:
pih03016
]
UB51_12370
Enzymes [BR:
pih01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
UB51_12370
Messenger RNA biogenesis [BR:
pih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
UB51_12370
Transfer RNA biogenesis [BR:
pih03016
]
Prokaryotic type
tRNA degradation factors
UB51_12370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
SPATA25
S1_RRP5
IL7
Motif
Other DBs
NCBI-ProteinID:
AJS59121
LinkDB
All DBs
Position
complement(2856987..2859071)
Genome browser
AA seq
694 aa
AA seq
DB search
MENRVEMQLGGRTLILETGRFAKQANAAVMVHYGETVVLCTVTASNEPKDLDFFPLTVNY
EERLYAVGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQD
CAPDIAAMIGTSAALSISDVPFSGPIGGVAVGRKDGQFIINPNTADQAASDLYLVVAGTK
DAIMMVEAEANEVPEEIMLEAIMFGHDEIKKIVATIEELVAKAGKEKMAVKLHAVNDTAN
HEVREFAAAQLKDAVKISEKHARQDAIDAINEATVTLFEQKYIETPELMKDVKEVLHDIV
KEEVRRLITHDKVRPDGRNLDEIRKIECDTNILPRTHGTGLFTRGQTQALSVCTLGALGD
VQILDGIDPQESKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERAMSKVLPSEEDF
PYAIRLVSEVLESNGSTSQASICAGILAMMDAGVPIKAPVAGIAMGLIKDGDHVSILSDI
QGMEDHLGDMDFKVAGTAAGVTAIQMDIKIDGIDRAILNEALNQAKEGRMFILGKMMEAI
QQPRSNLSQYAPKIMTLQINPDRIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASTN
EEMNQKARGIIEGIVRQVEVGEIYVGTVKRIEKFGAFVEILPNKEGLVHISQLSTERVAK
CEDVIAIGDSITVKVTEIDQQGRINLSRKATLTV
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggagaatcgagttgaaatgcaattaggtggaagaactcttattttggaaacaggccgt
tttgctaaacaagcgaatgcagcagtaatggttcactatggtgagaccgtagttctgtgt
acagtaacagcttctaatgaacctaaagatttagatttttttccgctaacggttaattat
gaagaaagactgtatgcagttggaaaaataccagggggattcattaaacgcgaaggccgt
ccaagtgagaaagctattctttcaagccgactaactgaccgtcctattcgcccgttattc
cctgaaggattccgtaatgatgtacaagttcttaaccttgttatgagtgtggatcaagac
tgtgcacctgatattgcggctatgatcggtacttctgcagctctcagtatttctgatgtt
ccttttagtggtcctattggtggagttgctgttggacgtaaagatggacaattcatcatc
aatccgaacacagcagatcaagcagctagtgatctttatttggtcgttgcaggtacgaaa
gacgcgattatgatggtggaagcagaagccaacgaagtgccagaggaaattatgcttgag
gcaatcatgtttggtcatgatgaaatcaagaaaattgtagcgacgattgaagaattagtt
gcaaaggctggaaaagaaaaaatggcagttaaacttcatgcagtgaatgatactgctaat
catgaagttcgtgaatttgcagcagctcagcttaaagatgctgttaaaatatctgaaaaa
catgcacgtcaggatgccattgacgcgattaatgaagctacggtaactttatttgaacag
aagtacatagagactccggaactcatgaaagatgtcaaggaagtgctgcatgacatagtt
aaggaagaagtaagacgtttaattacacatgataaagttcgtccggatggacggaatttg
gatgagattcgaaagattgaatgtgatacgaatattttaccgcgtacgcatggcacagga
ttgtttacacgcggtcagacacaagcccttagtgtatgtacattgggagcacttggagat
gtacaaattcttgatggtattgatccacaggaatccaaacgctttatgcaccactataac
tttcctccgttcagcgtaggtgaggcacgtccgcttcgcgctcctggtcgtcgtgaaatt
ggacacggtgctttgggtgaacgtgcaatgtctaaagttctaccttctgaagaagatttc
ccttatgcaattcgtctagtatctgaagtgttggagtcgaatggttccacttcccaagct
agtatttgcgcaggtattcttgccatgatggatgcgggtgttccgattaaagcaccagta
gctggtatagctatgggattgatcaaagatggagatcatgtatcgattctatctgacatt
caaggaatggaagatcaccttggcgatatggactttaaagtagcaggaacagcagcaggt
gtgacagctattcaaatggatatcaaaatcgatggtattgatcgtgccattcttaatgaa
gcattgaaccaagctaaagaaggccgcatgttcatcttaggtaaaatgatggaagctatt
caacaacctagatcgaacctttctcaatatgctcctaaaattatgacgctgcagatcaat
ccagatcgtattcgtgatgttattggtgcaggtggcaaaattatcaataaaattattgaa
gagaccggtgtgaagattgacatcgaacaagatggtcgtgtcttcatcgcatctacgaat
gaagagatgaatcaaaaggctagaggtataattgaaggtattgttcgtcaggttgaagtt
ggcgaaatttatgtgggtacagtgaaacgaattgagaaattcggagcatttgtagaaata
cttccgaataaagaaggccttgtgcatatttctcaactatcgacagaacgtgtagctaag
tgtgaagatgtgatcgcaattggtgattctatcacggtgaaggtaacggagattgatcaa
caaggacgtattaatttgtcccgcaaagctacattaaccgtttaa
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