Paenibacillus sp. IHBB 10380: UB51_22310
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Entry
UB51_22310 CDS
T03836
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pih
Paenibacillus sp. IHBB 10380
Pathway
pih03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UB51_22310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pih03400
]
UB51_22310
Enzymes [BR:
pih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UB51_22310
DNA repair and recombination proteins [BR:
pih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
UB51_22310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_16
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AJS60738
UniProt:
A0A0D3VEK6
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All DBs
Position
4917486..4921010
Genome browser
AA seq
1174 aa
AA seq
DB search
MLQALIEAFSKDPDLKSIASGISVGMKEQLVSGLSGSARQIMMATLYEEVKRPMLIVTHN
MFSAQKIAEDLQEALSPEQVLLYSANELVAAESAISSPETLAQRIDVLMKCAQGFTGIVV
APFSGVRRLLPAPEVMANAQITIQYGGALQLDSFLMGMIEMGYERVERVEGKGEMSIRGG
IIDFYPMTSLLAYRVELFDDEVDSIRTFDPIDQRSIDKVNKVVITPCKEVIADHRRLEQA
ADAVEGLLAQQLDKMTDRQAKLRLKEEIQREIEMLREHVYFPEIYKYISLLYPERCHLFD
YLPDDTILILDEPTRLLETGKQLERDESEWNMHLLQNGKMLPEMPLSVDNDDIMYERRFQ
TLLISIFLRQVPHTQPQNILNITSRGMQDFHGQMNVLKSEMDRWHKSGTKVMMLASGEER
MERMRRVLQDYGIDEPIMLQGNLQTGFELPSIQLAVITEGEMFSQKQRKVRKLSKNIDNA
ERIKSYTELKVGDYVVHQNHGIGKYVGIGTLDINGIHKDYLHILYAGGDKLSVPIEQIDL
IQKYVGSEDKEPKIYKLGGNDWIRVKNKVRSTVQDIADDLIKLYAERQSTTGFGFEKDTP
EQQEFEEMFPYDETRDQLRAIEEIKKDMEQNRPMDRLLCGDVGYGKTEVAIRAAFKSAME
GKQVAVLVPTTILAQQHYETFRERFAGYPINIQVLSRFRSRKEQNEAIKGIKSGTVDVII
GTHRLLSQDLIFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHNYNLVREAVEREMARGGQVYYLYNRVQGIQEMASQ
ISELVPDARVGVGHGQMNESELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIQKRKVTVLGESDKPQTVWNTLIDTG
IDAYLPADYIYDSIQKIEIYKKVAATSSFEDISELEDELMDRFGELPEAVLNLLAVARQK
VYGRMYGIESIVKRGDDIILKFHEGQEKVVDNAKLAQIGNSFERRVQFEQEATMTIRIKG
KGLVEKQLMDLLEQFLEAIREPFKPKGELQDVSK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaagcacttatagaagctttttcgaaggatccagatttgaaatcgattgcgtcg
ggaatttcggtaggaatgaaggaacagcttgtctctggactatctggttcagctaggcag
atcatgatggccactttgtatgaagaagtcaaacgtccgatgttaatcgtgacccataat
atgttctctgctcaaaaaatagcggaagatttacaggaagcgctatcacctgagcaagtg
ctgctctattctgcgaatgaattagtagctgctgaatcagcgatctcaagtcctgagaca
cttgcacagcgcattgatgtgctaatgaaatgtgcacaaggattcacaggtattgttgtg
gctcccttctcgggggtacgtagactattacctgctcctgaagtaatggcaaatgcacaa
attacaatccagtatggaggcgcgttacaactggattcttttctcatgggtatgattgag
atgggttatgaacgtgtagagcgggtggaaggcaaaggagaaatgagtattcgtggtggg
attatcgatttctatcccatgacttcactccttgcttatcgggtggaattgttcgatgac
gaggtcgattccattcgtacatttgatccgatagaccagcgttcgattgataaagttaat
aaagttgtgataacaccatgtaaggaagttattgctgatcatcgccgtttagagcaggct
gcggatgcagttgaaggtttgcttgcacagcaattggataaaatgacggatcgtcaggcc
aagctgcgattgaaggaagaaatacaacgggaaatagagatgctacgtgaacatgtatac
ttcccagaaatttataaatacatctctttgctttacccagaacgatgtcatttgtttgat
taccttccggacgatacaattctaattcttgatgagcctactaggttgcttgagacaggt
aagcaactggagcgggatgaatctgaatggaatatgcatttgcttcagaacggtaagatg
cttccggaaatgccattgtccgttgataacgatgacattatgtatgaacgacgttttcag
acgctacttatttcgatttttctgcgtcaggttcctcatactcagcctcaaaatatatta
aatattacgagtcggggaatgcaagatttccatggtcaaatgaatgtgcttaaatcagag
atggatcgttggcataaatcgggcacgaaagtgatgatgttagctagtggcgaagaacgt
atggagcggatgcgccgtgttcttcaagattatggtattgatgagcccatcatgttacaa
ggaaatttacagaccggatttgaattaccatctattcaactagctgtcatcacagagggt
gagatgttttctcagaaacagcgtaaggttcgtaaactaagcaaaaatattgataatgct
gagcgtattaaaagttatacggagcttaaagttggcgattatgtcgttcatcagaatcac
ggaattggtaagtatgtaggtattggcacgctcgatattaatggcattcacaaggattat
ttgcatattctttatgccggaggagacaaactatctgttcctattgagcagattgacctg
atccagaaatatgtcggctcagaagataaagagccgaaaatctataagctaggtggaaat
gactggatacgtgttaagaataaagtccgttcaacggtacaagacattgccgatgacctt
attaagctatatgccgaacgtcaatcaacgacaggctttggatttgagaaggatacgcct
gaacagcaagaatttgaagagatgttcccttatgatgaaactcgtgatcagttgagagcg
atagaagagatcaagaaggacatggagcagaatcgcccgatggatcgcttattatgtgga
gacgtgggctacggtaaaacggaagttgcgattcgagctgcattcaagtcggccatggag
ggtaaacaggtagctgtcttagttcctacgacgattttggctcagcagcattatgagaca
ttccgagagcgctttgccggatatcctatcaacattcaagtgttaagtagattccgctca
cgtaaagagcagaatgaggcgatcaagggaatcaagtcgggtactgtagatgttattatc
ggaacccatcggttgttatctcaggatttgatctttaaggaccttggattattaattgtg
gatgaggaacaacgcttcggggttacccataaggaaaagcttaagaagctgaagacgaat
gtagacgtacttactttaacggcaacgccaatcccgcgtacattgcatatgtcgatgttg
ggtgttcgtgatctgtccgttattgagaccccgcctgagaatcgttttcctgtgcagact
tacgtggtagagcataattataacctcgtacgtgaagctgtggaacgcgagatggcacga
ggtgggcaagtatactatctatacaatcgagttcaggggattcaagaaatggctagtcag
atttcagaacttgtacccgatgcaagagtgggtgtaggacatggacaaatgaatgagtct
gagcttgagaagacaattctggatttcttagatggtgaatatgacgtgttagtaagtacg
agtattattgagacgggtgtagacattcctaacgtaaatacactaatcgtgcatgatgct
gacaaaatgggtctttcccagctttatcagctacgtggtcgcgtaggtcggtccaatcgg
attgcgtatgcttatttcacgtatcagcgtgataaggtgttgactgaagtcgctgagaaa
cgtctacagtctatcaaagagtttacagagcttggatcaggattcaaaattgctatgcgc
gacctctccattcggggcgcgggtaatttacttggagcagagcaacatggatttattgct
tctgtgggattcgatctgtattcacaaatgctagctgaggaaattcagaagcgtaaagtg
acggtgttaggagaatcggataagcctcagaccgtatggaatacgttgattgatacgggt
attgatgcttatttgcctgctgattatatctatgacagtattcaaaagattgaaatttat
aaaaaagtagctgcgacttcgtctttcgaggatatttcggaactagaagatgagctaatg
gaccgtttcggtgagttgccagaggctgtcttgaatttacttgctgtagctaggcagaag
gtttacggtagaatgtatggtatcgaatcaattgtaaagcgtggagatgatattatattg
aagttccacgaaggtcaggaaaaggtcgtggataatgccaaacttgcccagattggaaat
tcttttgaaagacgtgtacaatttgagcaagaggcaacaatgaccatacggattaaaggt
aagggacttgttgaaaagcagctaatggatcttctagaacaatttcttgaagccatccga
gagccgttcaaaccgaagggagaacttcaagatgttagcaaataa
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