Paramuribaculum intestinale: NF347_04945
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Entry
NF347_04945 CDS
T09294
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pii
Paramuribaculum intestinale
Pathway
pii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NF347_04945 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pii03021
]
NF347_04945 (rho)
03019 Messenger RNA biogenesis [BR:
pii03019
]
NF347_04945 (rho)
Transcription machinery [BR:
pii03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NF347_04945 (rho)
Messenger RNA biogenesis [BR:
pii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NF347_04945 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
Spore_III_AA
Mor
AAA_22
AAA
OB_RNB
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WLT42891
LinkDB
All DBs
Position
1120887..1122899
Genome browser
AA seq
670 aa
AA seq
DB search
MYNLDELSEKVDSELHAIAEGMGLKKMSSLPKNEVIDAILDQQAIDFAAMAAANMSNDKR
RQPRRKKNDAAVSGNGDNQSPSDDQQDGQGAKKRGRKPQQKRSDDSIASVEPEAQPQAES
AVAATEASAENPAPEKKRRGRPKGSRQKTEGESELKKSDEASEQSVDEAATVVKAEETMN
QSQTTPAADNHTPAQQHEPAAEAANQQRRNNDGQRQDMRNNQGDGFGAFFPRSEGRRFVP
RSQREKEEAAAQAAVAAATAPIQLNEPWQQDKQQQQQGKKNKQKNRNQNQQRQEPSYSFD
GLIETTGLLEVVPEGYGFLRSSDYNYLPSPDDVYLTPQQIKAYGLKTGDVVEATIRAPRE
NDKYFPMDKVKSVNGRSPEFIRDRVPFETLTPLFPEEKFNLTGGRANNLSTRVVDMFSPI
GKGQRGLIVAPPKTGKTILLKDIANAIAENHPETYIMILLIDERPEEVTDMSRSVNAEVI
ASTFDEPADKHVKIASLVLEKAKRMVECGHDVVILLDSITRLARAYNTVSPASGKILSGG
VDANALQKPKRFFGAARNIENGGSLTIIATALTETSSKMDEVIFEEFKGTGNMELQLDRK
LSNKRIFPAVDIMASSTRRDDLLLRTETLNRMWILRRFLSDRNSIEAMEFVKDRMERTPD
NDELLRTMGD
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtacaatcttgatgagttatcagaaaaggtagattctgaacttcacgccatagccgaa
ggcatgggactgaaaaagatgtcatcacttccaaaaaacgaggtgatcgatgccattctc
gatcagcaggccatagacttcgcagccatggcggccgccaatatgtcgaacgataaacga
cgtcagcctcgtcggaaaaagaatgacgcggctgtgtcgggcaatggcgacaatcaatct
ccatccgatgaccagcaggatggtcagggcgcgaagaaaagaggccgtaaacctcagcag
aaacgtagcgatgacagcatagcgtctgtcgaacccgaagcgcagccacaggctgaaagc
gccgtcgcggctacggaagcgtcggcagagaatccggcgccggagaagaaacgcaggggt
cgtccgaaaggaagccgccagaaaacggaaggggagtcagagttgaaaaaaagcgacgag
gcgtctgaacagagtgtggacgaagccgcgaccgtagtcaaggctgaagagacgatgaat
cagtcgcagacaacgcctgctgccgataatcatacgccggcgcagcagcatgagcctgcg
gcagaggcggccaatcagcaacgccgcaataatgacggtcagcgtcaggatatgcgaaac
aatcagggcgacggatttggcgcattcttcccgcgctcggagggccggaggttcgtgccg
cgctcgcagcgtgagaaagaggaagccgcagcacaggccgccgtggccgcagctacagca
cccatacagctcaacgagccgtggcagcaggacaagcagcagcaacagcagggcaagaaa
aacaagcagaaaaaccgcaatcagaatcagcagcgtcaagaaccgtcgtacagcttcgac
gggctgatagagactaccggactgcttgaagtagtgcccgaaggatatggcttcctgcgt
tcgagcgactacaattatctgccctcgcctgatgatgtgtatctgactccgcagcagatc
aaggcttatggtctgaagaccggcgatgtcgtggaagcaacaatacgcgctccgcgtgaa
aatgacaaatatttcccgatggacaaggtgaagagtgtcaacggccgttcgcccgaattt
attcgtgaccgtgtgccgttcgaaacccttacgcccctgttccctgaggagaaattcaat
ctgacgggagggcgggccaacaatctctctacccgcgttgtggatatgttctcgcctata
ggcaaggggcagcgcggacttatcgtggcgcctcccaagaccggtaagacgatacttctt
aaagatatcgccaacgccatagccgagaatcatcccgaaacatatataatgatactgctc
atcgacgagcgcccggaagaggtgaccgacatgagccgcagtgtcaatgccgaggtgata
gcctctactttcgacgagccggccgacaagcacgtgaagatcgctagccttgtgctggaa
aaagccaagaggatggtggagtgcggccacgacgtggtgatactgctcgactccatcacg
cgcctggcgcgtgcatacaatacggtgtcgccggcatcgggcaagatactgagcggcggt
gtggatgccaacgcgctgcagaagcctaaacgcttcttcggagccgcgcgcaatatagag
aacggcggatcgctgaccatcatagccaccgctctgaccgaaacaagctccaagatggac
gaggtgatattcgaggagttcaagggtactggcaatatggagcttcagctcgaccgcaag
ctgtcgaacaagcgcatattcccggctgtggacatcatggcgtcaagcacacgtcgcgac
gacctgctgctccgcacggagacactcaaccgcatgtggatactgcgccgcttcctctcg
gaccgcaattcgatcgaggccatggaatttgtcaaggaccgcatggagcgtacgcccgac
aacgacgaactgctccgcaccatgggcgactga
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