Paramuribaculum intestinale: NF347_11125
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Entry
NF347_11125 CDS
T09294
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pii
Paramuribaculum intestinale
Pathway
pii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NF347_11125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pii03019
]
NF347_11125
03400 DNA repair and recombination proteins [BR:
pii03400
]
NF347_11125
Enzymes [BR:
pii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NF347_11125
Messenger RNA biogenesis [BR:
pii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NF347_11125
DNA repair and recombination proteins [BR:
pii03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NF347_11125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SGNH
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WLT41512
LinkDB
All DBs
Position
2485274..2487196
Genome browser
AA seq
640 aa
AA seq
DB search
MMSRPNQPTPEEILRKYWGYDSFRPLQGEIIASVLSGHDTLGLLPTGGGKSLTFQVPGMI
LPGLTVVVTPLISLMTDQVDNLARRGIRAVCLHSGLTRAEHKLGVDRCNAGHAKFLYISP
EKLQSDTFLDTLRHIDVSLIVVDEAHCISQWGYDFRPSYLNIARLRTLFPDVPLLALTAS
ATPEVRADIMERLGFEGRRVFAASFARSNISYIVRAADHKDGLLLKALRGTSGSAIVYVR
SRRRTREIADMLQAEGISAAHYHAGLEIEEKNERQKQWKEGHIRVMVATNAFGMGIDKPD
VRFVAHYDLPPSLEEYYQEAGRAGRDGKPSYALTIASRHDRATLMRRLADAFPPRDFIKE
IYSQVCVSLGIAIGDGYNAVYEFDLDDFCRRFGRQPRMTRSAIELLARSGYWQYVDDVAS
RSRIMLTMRRDELYGLRLEKTDEDVLQQLLRTYTGLFADYVAINENQIAGRLGLTADEIY
QSLLSLGRHHVASYVPASNKPYIYFLTSRDEQRYVQIPVSVYEQRREVMKRRLDAMADFV
FNAGSCRVVRMLQYFGEKDACRCGNCDVCRESRQSTPGQTADSCTMEQTIVYIASQPGGH
TLDHIALQLQRPVKELIPVVRRMLDEGVLRLEGLNIISNS
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcacggcctaatcagccgacacccgaagagatcctccggaagtactggggctac
gactcgttcagaccgcttcaaggagagatcatcgcatcggtgctgtcgggacacgacacg
ctcggacttctccccaccggaggaggcaaatcgctgacgtttcaggtgccgggaatgata
ctaccgggactgacggtcgtggtcaccccgctgatttcgctcatgaccgaccaggtcgac
aatctggcgcggcgcggcatacgcgccgtgtgcctgcactccggactgacacgcgccgag
cacaaactcggggtggaccgctgcaacgccggacatgcgaaattcctatacatctcgccc
gaaaagctgcagagcgatacgtttctcgacacgctgcgccacatcgacgtcagcctgatc
gtcgtcgacgaagctcactgcatatcgcaatggggatatgacttccgtccctcctacctc
aacatcgcccggctgcggacactgtttcccgacgttccgcttctggcgctgacagcctcg
gccactcccgaagtgcgcgccgacatcatggagcgcctcggcttcgaaggccggagggtg
ttcgccgcaagctttgcccgctccaacatatcctacatagtcagggcggccgatcacaag
gacggactgcttctgaaagcgctgcgtggaacctctggctcggccatagtctacgtcaga
tcacgacgacgcacgcgcgagatagccgacatgcttcaggccgaaggcatatcggcggca
cattatcacgccggactggagatcgaagagaaaaacgagagacagaaacaatggaaggag
gggcatatacgtgtcatggtggccaccaacgccttcggcatggggatcgacaagcccgac
gtgcgcttcgtggcccactacgatctgccgccatcgctcgaagaatactatcaggaggca
ggcagagccggacgcgacggcaagccgtcgtatgctctcacgatagcctcgcgccacgac
cgcgccacactcatgcgcagactcgccgacgcctttccgccacgcgacttcatcaaggag
atctattcacaggtgtgtgtgtcgctcggtatcgccatcggcgacggctacaatgccgtc
tacgaatttgatctcgacgacttctgccgcaggttcggccgacaaccccgcatgactcgc
agcgccatagaactgctggcccgctccggctactggcagtatgtcgacgacgtcgcctcc
cggtcgagaatcatgctcaccatgcgacgcgacgagctctacggactgcgcctcgaaaag
accgatgaggatgtgctgcaacagctgctgcgaacctatacaggcctgtttgccgactat
gttgccatcaacgaaaaccagatagccggacgactggggctgacagccgacgagatctac
cagtcgcttctatcactggggcgacaccatgtggcaagctatgtgcccgcatcaaacaag
ccctacatctacttcctgacatcacgcgacgagcagcgctacgtgcagatacccgtcagc
gtctacgagcagcgcagggaggtcatgaagcgacgtctcgacgccatggccgacttcgtg
ttcaatgcaggttcatgccgtgtggtccgcatgctccagtacttcggcgagaaggatgcc
tgccgatgcggcaactgcgacgtgtgccgtgagtcaaggcagtctacgcctgggcagact
gccgactcctgcacgatggaacagaccatcgtttacatcgcgtcacagcccggcggacac
acgctcgaccacattgcgctgcagctccagcgacccgtcaaggagttgatacctgtcgtg
cgcaggatgctcgacgaaggagtgctgaggctcgaaggcctcaatatcataagtaactca
tag
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