Pigmentibacter sp. JX0631: QEJ31_04065
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Entry
QEJ31_04065 CDS
T08995
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pij
Pigmentibacter sp. JX0631
Pathway
pij02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pij00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QEJ31_04065 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pij03021
]
QEJ31_04065 (rpoD)
Transcription machinery [BR:
pij03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QEJ31_04065 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
WGL61543
LinkDB
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Position
complement(943096..944700)
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AA seq
534 aa
AA seq
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MEEDDDLLGDVDLDADDATALPEDDFLAAEEFGADLGGEEEELDASARSNDPVRVYLRKM
GQVALLSRDGEVEIAKKIENEENKLLEHLVSLRIGINHMCDIGQKFIDGIIKAKNLVKGF
DDEQDQANDEGQSQRVRVLVESFMKLAKTVIEIEDKYGLQGLDKLSSHEREILVESRNQM
FEIVKEININRRIIQQIVTELDTHAKIVSDCMKEINKVKVRTRLDEARLSAYCNSNATRP
IEVNFLTERDWENFKATYLSAHNSILLSEQACFLSRSEIAIKYQVISNANRFAEEAKREL
IEANLRLVVSIAKKYMNRGLQFLDLIQEGNIGLMKAVEKFEYRRGYKFSTYATWWIRQAI
TRAIADQARTIRIPVHMIETINKMVRTSRQLVQEMGREPTPEEIAQRMDMSIEKVRKVMK
IAREPISLEAPIGEEEDNHYGDFLEDKAHGAPIDIVANQSLSEQTKKVLATLTSREEKVL
RMRFGIGEKTDHTLEEVGQSFDVTRERIRQIEAKALRKLRHPSRSKKLKAFIES
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagacgacgatcttcttggcgacgttgatctcgatgctgacgatgcaacagct
ttacctgaagatgattttcttgcagctgaagaatttggtgccgatcttggcggcgaagaa
gaagaactcgacgcttctgcgcgcagcaatgatcctgtgcgtgtttatctcagaaaaatg
ggacaagtagctttactctcccgtgacggtgaagttgagatagcaaagaaaattgaaaat
gaagaaaataagctcctagaacatcttgtgtccttacgcattggtatcaaccatatgtgt
gatattggacagaagtttattgatggcattattaaagctaaaaatttagttaagggcttt
gatgacgagcaagatcaagctaacgacgaaggccaatcccaacgggttcgagtgttggtt
gaaagctttatgaaactggcaaaaactgtcattgaaattgaagataaatatggcttgcaa
ggactagataaattatcttcccatgagcgcgaaatattagttgaatcccgcaatcaaatg
tttgaaattgtcaaagaaattaatatcaatcgccgtatcattcaacaaattgtgacagag
cttgatacgcatgcaaaaattgtttccgactgcatgaaggaaatcaataaagttaaagtt
agaacccgtttagatgaagcgcgtttgtcagcatattgtaactcaaatgcaacaagacca
atagaagtaaatttcttaactgaaagagattgggaaaactttaaggcgacttatttatca
gcccataattctattttgctgagtgaacaagcttgtttccttagtcgtagtgaaattgca
attaagtaccaagttattagcaatgcaaatcgttttgccgaagaagcaaaacgtgaactc
attgaagcaaacttaagattagttgtttctatagcaaaaaaatacatgaaccgtggatta
cagtttttggatctcatccaagaaggtaacatcggtttaatgaaagcagtggaaaagttt
gaataccgccgtgggtataagtttagtacttatgcaacttggtggatccgccaagctata
acacgcgctattgcagaccaagcaagaacaattcgtatcccagtacacatgatagaaacc
atcaacaaaatggtacgaacaagtcgccagttggtgcaagaaatggggcgtgaacctacc
cctgaagaaattgcacaacgcatggatatgagtattgaaaaagtacgcaaggttatgaaa
attgcccgcgaaccaatttctttggaagccccaattggcgaagaagaagataatcactac
ggagattttcttgaggataaagcacatggagcaccaattgatattgtagcaaaccaaagt
ttgtccgaacaaactaagaaagttcttgcaactttaacttccagggaagaaaaagtattg
cgcatgcgctttggtattggtgaaaaaacggatcacactttggaagaagtgggacaaagt
tttgatgtaacccgtgaacgtatccgccaaattgaagcaaaagcgttaagaaaattacgt
catccaagtcgttctaaaaaactaaaagcctttatcgaaagctaa
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