Pigmentibacter sp. JX0631: QEJ31_10620
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Entry
QEJ31_10620 CDS
T08995
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pij
Pigmentibacter sp. JX0631
Pathway
pij03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pij00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QEJ31_10620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pij03019
]
QEJ31_10620
03009 Ribosome biogenesis [BR:
pij03009
]
QEJ31_10620
Enzymes [BR:
pij01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QEJ31_10620
Messenger RNA biogenesis [BR:
pij03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QEJ31_10620
Ribosome biogenesis [BR:
pij03009
]
Prokaryotic type
rRNA helicases
QEJ31_10620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
PASTA
CMS1
Cas3-like_C_2
Lipoprotein_16
Phage_integrase
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
WGL58974
UniProt:
A0AA95G2Z3
LinkDB
All DBs
Position
complement(2418224..2419864)
Genome browser
AA seq
546 aa
AA seq
DB search
MTNTNTPTAEESSIFNLLPEVVRKNLESQGITKPTPIQQATYEPVLEGKDVIAQSRTGSG
KTLAFGLPAFSRLQKPQVGGKPRILVLTPTRELAQQVADVFETNFKPQGFKILAVTGGKS
YRFQTSVIQRGVDAIVATPGRLNDLLEQGIVSLTGVEILVLDEMDEMLDFGFAEDIIKIK
TAIGKKAQTLLFSATFPPKVTNIARQMVSNPFEVKVASTDTSTGQIDHGFIEVKMGRNLD
ALLGLLIYHDPEHAIIFCKTREETRNIHNALLERGFAAGVLNGEMTQNDRSLTMDRFKNR
QLRILVATDVAARGIDISGLSHVINYTVPTNVETYTHRAGRTGRAGATGKAWTIITHVER
REFQFVCSKIKINPVRLELPSAKKIATQFFNNMLFRINEDSVVIPDYIHQSVNQVVESLE
ENKLKEILSTLLKSEATRQLGKSLQVEDIAPTFKTEFGANVEAPKFGGDRNRSGRGGYGR
NDRGPRGPSKSNGRSSERSGRFGNSSGRFGDQKKSGQKQDRQNSFGGRGTIKKSADSGSK
RSYPIA
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgacaaataccaatacacccacagcagaagagtcttctatttttaacctattgccagaa
gtagtacgtaaaaaccttgaatctcaaggaattactaagcctacccctattcaacaagca
acttatgagcccgttcttgaaggcaaagacgttattgcacaaagcagaaccggttctggt
aaaaccttagcctttggactacctgcattttctcgtcttcaaaaaccacaagtaggcgga
aaaccaagaattcttgtacttactccaactcgggagcttgctcaacaagttgctgacgta
tttgaaacaaactttaaacctcaaggatttaaaatattagctgttactggaggtaagagc
tacagattccaaacttcagtcattcaaagaggcgtagacgctatagttgctacccctggt
cgtcttaacgacttattagaacaagggattgtaagccttacaggtgttgaaattcttgtc
cttgatgaaatggacgaaatgctagattttggttttgccgaagatattattaaaattaaa
acagcaatcggaaaaaaagctcaaactcttttattttctgccacttttccaccaaaagtt
actaatatcgcaagacaaatggtttcaaatccctttgaagttaaagtagctagcactgat
actagtactgggcaaatagatcacggatttatcgaagtaaaaatgggcagaaatcttgat
gccttactaggactcttaatttatcacgatccagaacatgccatcattttctgtaaaacc
agagaagaaactcgtaatatccacaatgctctacttgaaagaggttttgcagctggcgtt
ttaaatggtgaaatgacacaaaatgaccgtagcttgacgatggatcgctttaaaaacaga
cagcttagaatattagttgctactgatgttgctgcgcgtggcatagacatttctgggtta
tctcatgttataaactataccgtacctactaatgtggaaacatatacccaccgtgctggt
cgtacaggaagagcaggagctacaggaaaagcatggacaattattacccatgtagaacgc
agagaatttcaatttgtatgcagcaaaataaaaatcaatccagttcgtttggaattgcct
agcgctaaaaaaattgcgactcaattctttaacaatatgttgttccgtataaatgaagac
tcagttgttattcctgattatattcaccaatctgtaaaccaagttgttgaaagtcttgaa
gaaaataaattgaaagaaattctttcaacattacttaagtcagaagcaactagacaatta
gggaaaagtcttcaagttgaagacatagctccaacttttaaaactgaatttggcgcaaat
gtagaagcacctaaatttggtggcgatagaaaccgttcaggtagaggtggttacggaaga
aatgatagaggcccaagaggtccaagcaaatctaatgggcgctcttctgaaagaagcggt
agatttggaaatagttctggacgctttggagaccaaaaaaagtctggccaaaaacaagat
cgtcaaaatagttttggtggccgtgggactataaaaaaatcagctgactcaggaagcaaa
agaagttatccaatagcttaa
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