Pseudomonas imrae: OQ460_03455
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Entry
OQ460_03455 CDS
T11325
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pim Pseudomonas imrae
Pathway
pim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OQ460_03455 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pim03019
]
OQ460_03455 (rnr)
03016 Transfer RNA biogenesis [BR:
pim03016
]
OQ460_03455 (rnr)
Enzymes [BR:
pim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OQ460_03455 (rnr)
Messenger RNA biogenesis [BR:
pim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OQ460_03455 (rnr)
Transfer RNA biogenesis [BR:
pim03016
]
Prokaryotic type
tRNA degradation factors
OQ460_03455 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
XLY93964
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All DBs
Position
588758..591388
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AA seq
876 aa
AA seq
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MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVIPDNPKVQQEV
LVTPGRNGAAKVGQFVEVKITHWPTPRFQPQGDIVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDR
LAMVCEMTISKTGEMTDYQFYEAVIHSQARLTYNKVSTILEQPKTSEAKALRGEYGHVVP
HLKQLYALYKVLLGARHIRGAIDFETQETRIIFGSERKIAEITPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPSPKDYQALLA
SIKDRPDFHLIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKMNTPHVKRAGAMSIPKARIYPYDEAILEQLGEQCSMNERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTLEAPIGRKKRGAETSAPAKKGAPAKASAA
EPAAAKPARRSSSKEKASDAYRPGDAAAKNAELRKSRELKQQLLNEAKGGGKATSGGKSQ
GADKPSGKPSKHRKGPPKAGSAPAKSGGSRKPKAKS
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctattcctagccgcgaactgatcctggcgcacctcgccgatcggggttcgcctgctagc
cgcgagcagttggttgaagagttcggtctgactaccgaagaccagctcgaggccctgcgc
cgccgcctgcgagccatggagcgcgacgcgcagttgatctatacccgccgaggcacttac
gcgccggtggacaaactcgaccttatccttggtcgcattgcgggtcaccgtgatggtttc
ggcttcctgattcccgatgacggcagtgacgacctgttcatgagcccggcacaaatgcgc
ctggtgttcgatggcgaccgtgccctggcccgggtgtccggcctggatcgtcgtggccgt
cgtgaaggtgtgatcgtcgaagtggtgtcccgtgcccacgagtccatcgtcggccgttac
ttcgaagaaggcggcatcggctttgttattccggataacccgaaggtccagcaggaagtg
ctggtgactccgggccgtaatggcgccgccaaggtcggtcagttcgtcgaggttaaaatc
acccactggccaaccccgcgcttccagccacagggcgatatcgtcgaagtggtcggcaac
tacatggcgccgggcatggaaatcgatgttgcgttgcgcacctacgatattcctcacgtc
tggccggaggcggtgctcaaagaggccgccaagctcaagccggaagtcgaagagaaagac
aaagagaagcgcatcgacctgcgtcatctgccgtttgtcaccattgatggtgaagatgcc
cgtgacttcgacgatgcggtctactgcgaagccaagcccggcaagctgcgcctgttctcc
ggaggctggaagctctacgtcgcgatcgccgatgtttccagttacgtgaagatcggttcg
gccctggacaacgaagcccaggtgcgtggcaactcggtgtacttccccgagcgcgtgatc
ccgatgctgcctgagcagttgtccaacggcctgtgctccctgaacccgaaagtcgaccgt
ttggccatggtgtgcgagatgactatctcgaaaaccggcgaaatgaccgattaccagttc
tacgaagcggtgatccactcccaggcgcgcctgacctacaacaaggtcagtaccatcctg
gaacagccgaaaaccagcgaagccaaggcgctgcgtggtgagtacggtcatgttgtgccg
catctgaagcagttgtatgccttgtacaaggtgctgttgggcgcacgtcatatccgtggt
gcgatcgattttgaaacccaggaaacccggatcatctttggctccgagcgcaaaatcgcc
gaaatcaccccgacgacgcgtaacgacgcccacaaactgattgaggaatgcatgctggcg
gccaacgtggccactgctgaattcctgaaaaagcacgaaattcctgcgctgtaccgggtc
cacgacggtccgccgccggagcgcctggaaaaactgcgcgcgtttctcggcgagcttggc
ctgtccctgcacaaaggcaaggacggtccatcgcccaaggattaccaggccttgctggcc
agcatcaaggatcgtccggacttccacctgatccagaccgtgatgctgcggtccctgagc
caggcggtgtacagcgccgacaaccagggccactttggcctgaattacgaggcgtacacc
cacttcacctcgccgattcgccgttacccagacttgctcacgcaccgggcgatccgcagc
gtgatccattccaagatgaataccccgcacgtcaagcgtgcaggcgccatgagcattccg
aaggcgcggatctatccgtacgacgaagcgatccttgagcaattgggcgagcagtgctcc
atgaacgagcgtcgcgccgatgaagccacccgtgacgtggtgaactggctcaagtgcgag
ttcatgaaagaccgtgtgggtgagtcgttcccgggtgtgatcactgcggtgaccggcttt
gggctgttcgtagaattgaccgatatctacgttgaagggctggtccacgtcacggccttg
ccgggggactattaccacttcgatcctgtgcatcaccgcttggcgggcgagcgcaccggt
cgcagctttcgcctgggtgacacggttgaagtgcgagtcatgcgcgtcgatctcgacgag
cgcaagatcgacttcgaaatggcagaaaagaccctcgaagcgccgattggccgcaagaag
cgtggtgctgagacttcggcgccggcaaaaaaaggcgccccggctaaagcctccgccgcc
gaacctgcggcagccaagcctgcgcgccgttcgtcgagcaaagagaaagccagcgacgcg
taccgtcctggcgatgctgcggcgaaaaacgccgagttgcgcaaaagtcgcgagttgaag
caacagttgctcaacgaggccaaaggcggtggtaaggcgacgtctgggggaaagtcccaa
ggcgccgacaagccatcgggcaaaccgagtaaacaccgtaaaggcccgcccaaggcgggt
tcggccccagccaaaagtggcgggtcgcgcaaacctaaggccaagtcatga
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