Pseudomonas imrae: OQ460_04170
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Entry
OQ460_04170 CDS
T11325
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pim Pseudomonas imrae
Pathway
pim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
OQ460_04170 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pim03400
]
OQ460_04170 (recD)
Enzymes [BR:
pim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
OQ460_04170 (recD)
DNA repair and recombination proteins [BR:
pim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
OQ460_04170 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
NAT10_TcmA_helicase
SH3_13
AAA_22
Viral_helicase1
UvrD-helicase
AAA_16
SLFN-g3_helicase
AAA_17
AAA_28
DEAD
T2SSE
TraI_hel_assoc_N
PhoH
NTPase_1
AAA_5
AAA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
XLY94095
LinkDB
All DBs
Position
757835..759880
Genome browser
AA seq
681 aa
AA seq
DB search
MSLETPLAPLNHAADLLELLECWVERGWLRALDKAFVGFLHELEPHTDPLVLLAAALTSH
QLGHGHVCLDLFETLKAPDFALSLPPEGDLPGSAMLLPSQLLGGLDGAHWCRTLAASQLV
ALAVDGSAAAQSRPLVLSGKRLYLRRYWTYERRIDNALRQRLATREPVAVDLPQRLDGLF
DQAPPDGVIDWQKLACALATRGAFSIVTGGPGTGKTTTVVRLLALLQAPAVESGAALRIR
LAAPTGKAAARLTESISQQVRSLKVSDSVREKIPTEVTTVHRLLGSRPGTRHFRHHAGNL
LPLDVLVVDEASMIDLEMMANLLDALPPHARLVLLGDKDQLASVEAGAVLGDLCRDAEAG
WYSRQTREWLESVSGESLAASGLHEDLDGSHPLAQQVVMLRYSRRFGEGSGIGQLARWVN
QQNPEQARQLLAGRTHGDLFYLSLKGEHDRALERLVLDGQGEGAHGYRYYLNLLHTTRPP
ADTPRDDSRWADWARQLLQAFDAFQLLCAVRKGPWGVEGLNQRITAALLKTRLIDSDQQW
YEGRPVLMTRNDYGLGLMNGDIGIALKLPESNGGPQVLRVAFPRNDGQGGVRFVLPSRLN
DVETVYAMTVHKSQGSEFTHTALILPDALNPVLTKELIYTGITRARDMFSLIEPRGGVFE
EAVRRKVKRLSGLMLELGLED
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcgagacccccttggcgcctctcaatcacgctgccgatctgcttgaactgctt
gagtgttgggtggaacgcggctggctgcgggcgctggataaagcctttgttggttttctc
cacgagctcgagccacacaccgatcccctggtattgctggcggcagcccttaccagccat
caacttggccatggtcacgtttgcctagacctgttcgaaacgttgaaggcgccggacttc
gccttgtccttgccgcccgaaggagatttgccgggcagtgccatgctgctgccttcgcaa
ttgctcggtggcctggacggtgcccattggtgtcgcaccctggccgccagccaactggtc
gcgctggctgtagacggcagtgcggcggcgcaaagccggcccttggtgttgtcgggcaag
cgcttgtatctgcgccgttattggacttatgagcggcgcatcgacaatgccttgcgccag
cggcttgccacccgggaaccagtggcggtggatctgcctcagcgcttggacggtttgttt
gaccaggcaccgccggacggggtgatcgactggcagaaactcgcctgtgccttggccact
cgcggtgcgtttagcatcgtcacgggcggccctggcacgggcaagaccacgacagtagtg
cgattgttggccttgttgcaggcgccggccgtggagagcggcgcggccttgcgcattcgt
ctggcagcgcccactggcaaggccgcggcacgcttgactgagtccatcagccaacaagta
cgctcgcttaaagtgtccgacagcgtaagggaaaaaatccctaccgaagtcaccactgtt
caccgcctgctgggcagccgccccggtacccgacattttcgtcatcacgctggcaacctg
ttgccattggatgtgctggtggtcgacgaagcttcaatgatcgacctggaaatgatggcc
aacctgttggacgcgttgccaccccatgctcgattggtgttgctaggcgataaggatcaa
ctggcctctgttgaagccggcgcggtgctcggtgatttatgccgggatgccgaggctggc
tggtacagccggcaaacccgcgaatggctggagagtgtcagcggtgaatcgttggcggcc
agcggtttgcacgaagacctcgacggtagccacccgctggcgcagcaagtggtgatgttg
cgttactcccgacgtttcggcgaaggcagcggcatcggccaactggcacgctgggtcaat
cagcaaaaccctgagcaagcccgacaactgctcgccggccgcacgcatggcgacctgttc
tacctcagcctcaagggcgagcatgaccgtgccctggaacgtctggtgctggatgggcag
ggcgaaggcgcccatggttatcgctactatctgaatctgttgcacaccacgcgtccgcct
gcagatacaccacgcgatgattcacgctgggccgactgggcccgccaacttctgcaggcg
ttcgatgccttccaattgctgtgcgccgtgcgcaagggcccgtggggtgtcgaaggcctg
aaccagcgcatcaccgccgcgttgctcaagacccggctgattgacagcgatcagcaatgg
tacgaagggcgtccggtattgatgacccgcaatgactatgggttggggctgatgaatggc
gatatcggcatcgccctgaaactgcctgaaagcaacggcgggccgcaggtgttgcgcgtg
gctttcccgcgcaacgacggccagggtggcgtgcgttttgtcctgcccagccgactcaac
gatgtggaaacggtctatgccatgaccgtacacaagtcccagggatcggagttcacccat
acggcgctgatcttgccggacgccttgaacccggtgctgaccaaggaactcatctacacc
ggaatcactcgcgccagggacatgttcagcctgattgaaccgcgcggtggggtgttcgaa
gaggctgttcggcgtaaggtgaaacgcttgagtgggctgatgctggagcttgggcttgag
gattaa
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