Pseudomonas imrae: OQ460_08685
Help
Entry
OQ460_08685 CDS
T11325
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pim Pseudomonas imrae
Pathway
pim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OQ460_08685 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pim03400
]
OQ460_08685 (mfd)
Enzymes [BR:
pim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OQ460_08685 (mfd)
DNA repair and recombination proteins [BR:
pim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OQ460_08685 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XLY94932
LinkDB
All DBs
Position
complement(1725274..1728723)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAEAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVESVKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPARPLLPPAELFLPVEDCFARLKNWPRVVASQQDVETGVGRERFPAQALPDL
AIQAKANQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KDRLAITIAPLDEGLVLNDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDNQTAEFLTMEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
AIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL
FERLIPKTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgtcctgcgtctaccgctactccctgccgaagcaggtaaacagcattggggcaac
ttgcccggtgccgccctgagcctggccatcgccgaggctgccagcgcagccaagcgcttt
accctgctgctgaccgccgacagccaaagcgctgaacgactggagcaggagctgagcttc
ttcgcccccgatttgccggtactgcattttccggactgggaaaccctgccctacgatctg
ttctcgccgcatcaggacatcatctcccagcgcatcgccagcctgtaccgcctgccggaa
ctcgcccatggtgtgctggtagtgccgatcaccaccgccctgcaccgcctggcaccgacc
aagttcctgctgggcagcagcctggtgctggatatcggccagaagctcgacgtggaacaa
atgcgcacgcgccttgaagccagcggctaccgttgtgtcgacacggtgtacgagcacggc
gagttcgcagtgcgtggggcgctgatcgatctgttcccgatgggcagcaaactgccttat
cggatcgacctgttcgatgacgaaatcgaaaccctgcgcaccttcgatccggaaaaccag
cgttccatcgacaaggtcgagtcggtcaagctgctgccagcccgggaattcccgctgcaa
aaagacgcagtgacgcgcttcaaggcgcgctttcgcgagcgttttgacgtggacttccgt
cgctgcccgatctttcaagacctgagcagcgggattacaccggccggtatcgagtactac
ctgccgctgttcttcgatgaaacctcgaccctattcgattacctaccccaggacacccaa
gtgttctccctgcccggcatcgagcaggcggcggagaacttctggaacgatgtgcgaaac
cgctatgaagagcgtcgcgtcgacccggcccgccctttattgccgcccgcggaattgttc
ctgccggtggaagactgcttcgcccgcctgaaaaactggccgcgcgtagtcgccagccag
caggacgtggaaaccggtgttggccgtgagcgtttccccgcacaagcgctgccagacctg
gcgatccaggccaaggccaaccaaccactggaagcgctctccaacttcctcggcgacttc
cctggccgcgtgctgttcactgccgaatccgccggccgccgcgaagtgctgctggaactg
ctcgaacgcctgaaactgcggcccaaaaccgtagacagttggccagactttgtcgccagc
aaggatcggctggcgatcactattgcaccgctggacgaaggcctggtactgaacgacccg
gccctggcgctgatagccgaaagcccgctgttcggtcaacgcgtgatgcagcgcagacgt
cgggaaaagcgcgccgacgccaacaacgatgcggtaatcaagaacctcaccgaactgcgc
gaaggcgcgccggtagtgcatatcgaccacggtgtcgggcgttacctggggttggcgact
ctagagatcgataaccagaccgccgaattcctcaccatggaatacgccgagggcgcgaag
ctctacgtacccgtggccaacctgcacctgatcgcccgctacaccggcagcgacgatgcc
ctggcgccgctacaccgcctgggctccgaaacctggcagaaagccaagcgcaaagccgca
gagcaggtgcgtgacgtggccgccgaactgctcgacatctatgcccggcgtgccgctcgc
gagggctacgccttcgccgatccgaaggccgactacgcgacgttcagcgccggcttcgcc
tttgaagaaaccccggaccagcaaaccaccatcgacgccgtgcgcgccgacatgctggcg
cccaaaccgatggaccgcctggtctgcggcgacgtgggcttcggcaagaccgaagtggcg
atgcgcgcagccttcattgcggtgcacggcggtcgccaggtggcgattctcgtccccacc
accctgctcgcccagcagcactacaacagctttcgtgaccgctttgccgattggccggtg
actgtggaagtgatgagccgcttcaagtccgccaaggaggtcaacgcagcggtcgctgac
ttggcagaaggcaagatcgacatcgtgatcggcacccacaaactgctgtcggacgatgta
aagatcaagaacctgggcctggtgatcatcgacgaagaacatcgctttggcgtgcgccag
aaagaacagctcaaggccctgcgcagtgaggtcgacatcctgaccctcaccgccacgccg
atcccacgcacgctgaacatggcggtgtctggcatgcgcgacctgtcgatcattgccacg
ccgcccgcgcggcgcctgtcggtgcgcaccttcgtcatggagcagaacaaaagcacggtc
aaggaagcgttgctgcgggagctgctgcgaggcgggcaggtttattacctgcacaacgac
gtcaagaccatcgagaaatgcgccgccgacctggccgaactagtgccggaagcacggatc
gccatcggccacgggcagatgcgcgaacgcgaactcgagcaggtgatgagcgacttctac
cacaagcgtttcaacgtgctgatcgcctcgaccatcatcgaaaccggcatcgacgtgcca
agcgccaacaccattatcatcgagcgggccgacaagttcggcctggcgcagttacaccag
ttgcgcggccgggtcgggcgcagccaccaccaggcgtatgcgtatttactcacaccgccg
cgccagcagatcacctccgacgccgaaaagcgtctggaagctatcgccaacacccaggac
ctgggggcaggcttcgtgctggccaccaacgaccttgaaatccgtggtgccggcgaactg
ctgggggacggccagagcgggcagatccaggcggtcggcttcacgctgtacatggaaatg
ctcgagcgcgcggtgaaagccatccgcaagggcgaacaaccgaaccttgaccaaccgctg
ggcggtggcccggaaatcaacctgcgcttgccggcgttgattcccgaagactacttgccg
gacgttcatgcgcgactgatcttgtataagcgcatcgcctcagccaccgacgaagaaggc
ctcaaggacctgcaagtggagatgatcgaccgcttcggcctgctaccggaaccgaccaag
aacctggtacgcctgacgctgctcaaattgcaggccgagcaactgggcatcaagaaagtc
gatgccggcccccagggtggacgcatcgagtttgaagcgcagacccccgtggatccgctg
gtattgatcaagctgattcagggccaacctaatcgctacaagttcgaaggcgcaacgctg
ttcaaattcatggtgccaatggaacgcgccgaagaacgctttaatacattggaggcgctg
tttgagcgcctcatcccgaaaactgcctga
DBGET
integrated database retrieval system
